Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 4.8e-310 1067.0 539 100.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.3e-254 882.9 585 79.0
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 7.0e-253 877.1 585 78.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 9.5e-242 840.1 582 75.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.3e-210 734.2 581 68.5
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.7e-201 704.9 503 72.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.7e-201 704.9 503 72.2
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.2e-200 701.4 436 80.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.0e-199 699.5 511 71.0
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 3.4e-199 698.7 585 64.4
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 7.6e-199 697.6 504 70.8
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 7.1e-197 691.0 508 69.7
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.2e-196 690.3 587 65.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.5e-196 688.7 576 64.8
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 7.8e-196 687.6 504 70.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.9e-195 685.3 593 63.1
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.6e-195 684.5 586 64.3
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.1e-194 683.7 508 68.9
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 5.6e-194 681.4 508 70.9
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 7.3e-194 681.0 581 64.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.3e-193 680.2 510 68.4
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.6e-193 679.9 506 70.8
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.6e-193 679.9 590 63.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 8.1e-193 677.6 565 64.6
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-192 676.8 507 68.2
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.4e-192 676.8 584 63.7
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.8e-192 676.4 507 69.6
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.4e-192 676.0 508 68.9
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.4e-192 676.0 589 63.3
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.1e-192 675.6 504 70.2
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.1e-192 675.6 561 64.3
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.0e-192 675.2 516 69.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.9e-192 674.5 589 63.3
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.6e-191 672.5 536 65.3
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 3.4e-191 672.2 579 62.3
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 7.6e-191 671.0 583 63.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.3e-190 670.2 511 66.9
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.3e-190 670.2 510 68.6
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.9e-190 669.1 530 67.4
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.9e-190 669.1 510 67.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.8e-190 668.7 584 62.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.1e-189 667.2 508 69.1
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.4e-189 666.8 508 68.3
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.4e-189 666.8 552 64.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.9e-189 666.4 524 67.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 5.4e-189 664.8 583 63.8
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-188 663.7 591 61.3
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-188 663.3 598 60.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.0e-187 660.6 506 68.4
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.3e-187 660.2 591 61.4
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-187 660.2 601 60.2
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 5.1e-187 658.3 503 69.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 8.7e-187 657.5 524 66.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.1e-186 657.1 505 67.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.9e-186 656.4 562 61.7
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.9e-186 656.4 524 66.0
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.5e-186 656.0 502 67.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.5e-186 656.0 505 67.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 3.3e-186 655.6 525 66.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 5.6e-186 654.8 499 67.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 9.6e-186 654.1 598 61.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.3e-185 653.7 529 64.8
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.6e-185 653.3 525 66.1
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.8e-185 652.5 586 61.1
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 3.7e-185 652.1 501 66.5
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.1e-184 650.6 502 66.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.1e-184 650.6 610 59.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.4e-184 650.2 575 62.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.8e-184 649.8 502 67.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.3e-184 648.3 514 65.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 6.9e-184 647.9 581 61.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.0e-184 647.5 505 66.9
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.2e-183 647.1 585 61.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.2e-183 647.1 585 61.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.0e-183 646.4 501 66.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.0e-183 646.4 586 60.9
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 3.4e-183 645.6 585 60.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.4e-183 645.6 477 69.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 7.6e-183 644.4 576 62.3
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 9.9e-183 644.0 527 64.1
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.7e-182 643.3 585 60.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 8.4e-182 641.0 578 60.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 8.4e-182 641.0 583 61.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.4e-181 640.2 502 65.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.2e-181 639.0 594 59.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.5e-181 638.3 556 63.3
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.1e-179 631.7 580 61.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 8.7e-179 630.9 514 66.5
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 4.0e-176 622.1 494 67.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.2e-173 612.5 653 53.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.6e-169 600.1 568 60.6
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.2e-169 599.7 548 59.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.7e-169 599.0 460 69.1
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 5.0e-166 588.6 511 62.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 6.7e-163 578.2 538 59.7
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.8e-161 572.8 507 59.2
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 3.1e-160 569.3 608 52.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 7.2e-157 558.1 497 60.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 6.1e-156 555.1 418 68.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-155 554.3 476 61.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-155 553.5 532 55.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.4e-149 531.2 508 56.7
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.5e-146 523.9 547 53.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 2.0e-143 513.5 367 71.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 4.0e-139 499.2 367 69.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.5e-133 480.7 472 53.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.7e-132 475.7 300 77.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 5.7e-122 442.2 481 49.9
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-117 427.2 436 52.1
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.8e-115 420.6 483 48.7
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.3e-115 420.2 596 45.1
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.6e-111 407.5 463 47.5
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.6e-103 380.9 372 55.9
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 4.3e-101 372.9 497 47.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.6e-100 370.9 392 58.4
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 7.5e-98 362.1 317 61.8
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.5e-93 347.1 425 51.8
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 7.3e-93 345.5 480 42.1
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.2e-92 342.4 266 68.0
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 5.6e-77 292.7 204 70.1
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.2e-74 285.0 224 65.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.4e-73 278.9 266 55.6
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 8.1e-68 262.3 261 50.6
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.3e-61 240.0 202 57.9
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.7e-61 239.6 173 68.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.7e-60 236.9 378 38.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.6e-58 230.7 237 57.4
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.0e-57 226.5 174 64.9
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.2e-56 223.8 129 83.7
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.3e-54 218.4 287 44.3
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.7e-54 216.1 277 45.8
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-52 211.5 221 51.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.8e-46 191.4 113 82.3
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.5e-45 188.3 206 56.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-42 178.7 115 73.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.2e-40 169.5 293 38.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.0e-35 152.9 106 69.8
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.1e-35 152.5 185 50.3
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 4.7e-31 140.2 267 33.7
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.1e-27 127.1 216 39.8
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-26 124.8 112 56.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.9e-26 123.2 94 67.0
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.7e-26 122.9 267 33.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.8e-22 111.7 88 63.6
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.0e-18 98.2 56 85.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-17 95.9 71 66.2
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.2e-17 94.7 73 63.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 5.0e-17 93.6 57 82.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.5e-16 92.0 71 63.4
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.5e-16 90.1 90 48.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.0e-14 85.9 90 47.8
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.2e-13 82.4 54 72.2
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.8e-11 75.1 91 44.0
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.2e-10 72.4 214 33.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.0e-09 69.3 245 25.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.9e-08 65.1 59 54.2
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.6e-07 62.0 36 77.8
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.6e-07 60.8 40 75.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 8.0e-07 59.7 263 23.2
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.0e-06 59.3 105 33.3
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 6.8e-06 56.6 52 51.9


User provided reference genes

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