Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02911 Beta vulgaris HOM05D000064 ORTHO05D088278 8.5e-37 156.4 73 100.0
AUR62038655 Chenopodium quinoa HOM05D000064 ORTHO05D006783 6.3e-16 87.0 85 57.6
Ah.04g154170 Amaranthus hybridus HOM05D000064 ORTHO05D006783 1.6e-14 82.4 61 70.5
EL10Ac3g06559 Beta vulgaris HOM05D000064 ORTHO05D006783 4.6e-14 80.9 109 46.8
AUR62042846 Chenopodium quinoa HOM05D000064 ORTHO05D006783 1.0e-13 79.7 95 50.5
HanXRQChr12g0370821 Helianthus annuus HOM05D000064 ORTHO05D006783 5.6e-12 73.9 84 50.0
Manes.10G050000 Manihot esculenta HOM05D000064 ORTHO05D006783 7.3e-12 73.6 86 53.5
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 1.2e-11 72.8 84 50.0
MELO3C019819.2 Cucumis melo HOM05D000064 ORTHO05D006783 1.2e-11 72.8 84 50.0
CsaV3_6G036650 Cucumis sativus L. HOM05D000064 ORTHO05D006783 1.2e-11 72.8 84 50.0
Cc02_g10990 Coffea canephora HOM05D000064 ORTHO05D006783 1.6e-11 72.4 85 50.6
PSO801G0384 Papaver somniferum HOM05D000064 ORTHO05D006783 1.6e-11 72.4 84 47.6
Migut.F01719 Erythranthe guttata HOM05D000064 ORTHO05D006783 2.1e-11 72.0 85 49.4
PSO339G5177 Papaver somniferum HOM05D000064 ORTHO05D006783 2.1e-11 72.0 84 47.6
Peaxi162Scf00145g00189 Petunia axillaris HOM05D000064 ORTHO05D006783 2.1e-11 72.0 85 50.6
ECA233G0348 Erigeron canadensis HOM05D000064 ORTHO05D006783 2.8e-11 71.6 84 50.0
Sabra08G0024000 Salix brachista HOM05D000064 ORTHO05D006783 2.8e-11 71.6 87 52.9
Sc20g0001730 Simmondsia chinensis HOM05D000064 ORTHO05D006783 2.8e-11 71.6 86 50.0
Dinv31219 Davidia involucrata HOM05D000064 ORTHO05D006783 3.6e-11 71.2 85 49.4
Actinidia38864 Actinidia chinensis HOM05D000064 ORTHO05D006783 4.7e-11 70.9 85 49.4
Nitab4.5_0001659g0020 Nicotiana tabacum HOM05D000064 ORTHO05D006783 4.7e-11 70.9 85 49.4
Nitab4.5_0004860g0020 Nicotiana tabacum HOM05D000064 ORTHO05D006783 4.7e-11 70.9 85 49.4
PGR142G0746 Punica granatum HOM05D000064 ORTHO05D006783 4.7e-11 70.9 85 50.6
Sabra10G0174700 Salix brachista HOM05D000064 ORTHO05D006783 4.7e-11 70.9 86 50.0
Gohir.A10G203500 Gossypium hirsutum HOM05D000064 ORTHO05D006783 8.0e-11 70.1 86 47.7
Gohir.D10G211600 Gossypium hirsutum HOM05D000064 ORTHO05D006783 8.0e-11 70.1 86 47.7
Potri.008G035800 Populus trichocarpa HOM05D000064 ORTHO05D006783 8.0e-11 70.1 86 50.0
Solyc11g008430.2 Solanum lycopersicum HOM05D000064 ORTHO05D006783 8.0e-11 70.1 85 49.4
Sopen11g004220 Solanum pennellii HOM05D000064 ORTHO05D006783 8.0e-11 70.1 85 49.4
PGSC0003DMG400007437 Solanum tuberosum HOM05D000064 ORTHO05D006783 8.0e-11 70.1 85 49.4
Thecc.10G082200 Theobroma cacao HOM05D000064 ORTHO05D006783 8.0e-11 70.1 86 48.8
Duzib114G0342 Durio zibethinus HOM05D000064 ORTHO05D006783 1.0e-10 69.7 86 47.7
Lj3A938T45 Lonicera japonica HOM05D000064 ORTHO05D006783 1.0e-10 69.7 85 48.2
Potri.010G226300 Populus trichocarpa HOM05D000064 ORTHO05D006783 1.0e-10 69.7 86 48.8
QL08p054757 Quercus lobata HOM05D000064 ORTHO05D006783 1.0e-10 69.7 85 48.2
TAR623G0401 Trochodendron aralioides HOM05D000064 ORTHO05D006783 1.0e-10 69.7 85 49.4
Actinidia32436 Actinidia chinensis HOM05D000064 ORTHO05D006783 1.4e-10 69.3 85 48.2
Duzib106G1353 Durio zibethinus HOM05D000064 ORTHO05D006783 1.4e-10 69.3 86 48.8
Eucgr.G02863 Eucalyptus grandis HOM05D000064 ORTHO05D006783 1.4e-10 69.3 85 49.4
Atru.chr12.834 Acer truncatum HOM05D000064 ORTHO05D006783 1.8e-10 68.9 86 47.7
GSVIVG01016227001 Vitis vinifera HOM05D000064 ORTHO05D006783 1.8e-10 68.9 85 48.2
MSTRG.385 Avicennia marina HOM05D000064 ORTHO05D006783 2.3e-10 68.6 85 45.9
CAN.G321.45 Capsicum annuum HOM05D000064 ORTHO05D006783 2.3e-10 68.6 86 48.8
CiPaw.01G269500 Carya illinoinensis HOM05D000064 ORTHO05D006783 2.3e-10 68.6 85 48.2
Sed0011997 Sechium edule HOM05D000064 ORTHO05D006783 2.3e-10 68.6 84 48.8
THA.LOC104826679 Tarenaya hassleriana HOM05D000064 ORTHO05D006783 2.3e-10 68.6 86 47.7
TWI15G1101 Tripterygium wilfordii HOM05D000064 ORTHO05D006783 2.3e-10 68.6 86 47.7
CSS0015003 Camellia sinensis var. sinensis HOM05D000064 ORTHO05D006783 3.1e-10 68.2 85 48.2
TAR369G0330 Trochodendron aralioides HOM05D000064 ORTHO05D006783 3.1e-10 68.2 85 49.4
Cfa001681 Carpinus fangiana HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 48.2
Haze_16854 Corylus avellana HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 48.2
FvH4_7g18850 Fragaria vesca HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN01G2523 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN03G2087 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN06G4402 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN06G4714 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN10G0169 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
FAN10G4057 Fragaria x ananassa HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 49.4
vmacro04850 Vaccinium macrocarpon HOM05D000064 ORTHO05D006783 4.0e-10 67.8 85 45.9
Lj5g0004494 Lotus japonicus HOM05D000064 ORTHO05D006783 5.2e-10 67.4 85 48.2
THA.LOC104824232 Tarenaya hassleriana HOM05D000064 ORTHO05D006783 5.2e-10 67.4 86 46.5
Nn2g11579 Nelumbo nucifera HOM05D000064 ORTHO05D006783 6.8e-10 67.0 86 48.8
Oeu033876.1 Olea europaea HOM05D000064 ORTHO05D006783 8.9e-10 66.6 85 45.9
CARHR164820 Cardamine hirsuta HOM05D000064 ORTHO05D006783 1.2e-09 66.2 86 48.8
Thhalv10010730m.g Eutrema salsugineum HOM05D000064 ORTHO05D006783 1.2e-09 66.2 86 46.5
Prupe.2G209500 Prunus persica HOM05D000064 ORTHO05D006783 1.2e-09 66.2 87 47.1
THA.LOC104825221 Tarenaya hassleriana HOM05D000064 ORTHO05D006783 1.2e-09 66.2 86 46.5
CANSAT56G1141 Cannabis sativa HOM05D000064 ORTHO05D006783 1.5e-09 65.9 85 49.4
CiPaw.02G172400 Carya illinoinensis HOM05D000064 ORTHO05D006783 1.5e-09 65.9 85 47.1
MD01G1103700 Malus domestica HOM05D000064 ORTHO05D006783 1.5e-09 65.9 85 47.1
MD07G1170500 Malus domestica HOM05D000064 ORTHO05D006783 1.5e-09 65.9 85 47.1
Medtr1g094220 Medicago truncatula HOM05D000064 ORTHO05D006783 1.5e-09 65.9 84 47.6
Os03g0151900 Oryza sativa ssp. japonica HOM05D000064 ORTHO05D006783 1.5e-09 65.9 87 48.3
TWI63G1306 Tripterygium wilfordii HOM05D000064 ORTHO05D006783 1.5e-09 65.9 86 46.5
Aqoxy2G01778 Aquilegia oxysepala HOM05D000064 ORTHO05D006783 2.0e-09 65.5 86 47.7
AT3G54840 Arabidopsis thaliana HOM05D000064 ORTHO05D006783 2.0e-09 65.5 86 48.8
Glyma.20G182400 Glycine max HOM05D000064 ORTHO05D006783 2.0e-09 65.5 85 48.2
Zm00001eb403120 Zea mays HOM05D000064 ORTHO05D006783 2.0e-09 65.5 88 47.7
AL5G35940 Arabidopsis lyrata HOM05D000064 ORTHO05D006783 2.6e-09 65.1 86 47.7
Ciclev10032775m.g Citrus clementina HOM05D000064 ORTHO05D006783 2.6e-09 65.1 86 45.3
Glyma.10G208300 Glycine max HOM05D000064 ORTHO05D006783 2.6e-09 65.1 85 48.2
unitig_8.g4659 Utricularia gibba HOM05D000064 ORTHO05D006783 2.6e-09 65.1 86 47.7
Carub.0005s2145 Capsella rubella HOM05D000064 ORTHO05D006783 3.4e-09 64.7 86 48.8
Sp5g07580 Schrenkiella parvula HOM05D000064 ORTHO05D006783 3.4e-09 64.7 86 45.3
RcHm_v2.0_Chr1g0362731 Rosa chinensis HOM05D000064 ORTHO05D006783 4.4e-09 64.3 85 48.2
Rhsim09G0148900 Rhododendron simsii HOM05D000064 ORTHO05D006783 5.8e-09 63.9 85 44.7
RhsimUnG0186300 Rhododendron simsii HOM05D000064 ORTHO05D006783 5.8e-09 63.9 85 44.7
TPR.G10298 Trifolium pratense HOM05D000064 ORTHO05D006783 5.8e-09 63.9 85 47.1
HPP92_025989 Vanilla planifolia HOM05D000064 ORTHO05D006783 7.5e-09 63.5 85 45.9
HPP92_025999 Vanilla planifolia HOM05D000064 ORTHO05D006783 7.5e-09 63.5 85 45.9
Ca_10547_v3 Cicer arietinum L. HOM05D000064 ORTHO05D006783 9.8e-09 63.2 85 47.1
Phvul.007G098600 Phaseolus vulgaris HOM05D000064 ORTHO05D006783 1.3e-08 62.8 85 48.2
Psat6g178760 Pisum sativum HOM05D000064 ORTHO05D006783 1.3e-08 62.8 87 49.4
ATR1132G030 Amborella trichopoda HOM05D000064 ORTHO05D006783 1.7e-08 62.4 85 45.9
BcaC07g39774 Brassica carinata HOM05D000064 ORTHO05D006783 1.7e-08 62.4 86 44.2
COL.COLO4_17146 Corchorus olitorius HOM05D000064 ORTHO05D006783 4.9e-08 60.8 100 42.0
Nn2g13774 Nelumbo nucifera HOM05D000064 ORTHO05D006783 4.9e-08 60.8 86 43.0
BcaC02g09709 Brassica carinata HOM05D000064 ORTHO05D006783 6.4e-08 60.5 83 43.4
Lalb_Chr06g0170341 Lupinus albus HOM05D000064 ORTHO05D006783 6.4e-08 60.5 85 45.9
SGA_v2.0_scaffold2G01358 Striga asiatica HOM05D000064 ORTHO05D006783 6.4e-08 60.5 103 39.8
BcaB01g00154 Brassica carinata HOM05D000064 ORTHO05D006783 8.3e-08 60.1 87 44.8
Os10g0441800 Oryza sativa ssp. japonica HOM05D000064 ORTHO05D006783 8.3e-08 60.1 84 42.9
VMungo0720G2060 Vigna mungo HOM05D000064 ORTHO05D006783 8.3e-08 60.1 85 44.7
CDE10G1195 Ceratophyllum demersum HOM05D000064 ORTHO05D006783 1.4e-07 59.3 87 44.8
CDE10G0209 Ceratophyllum demersum HOM05D000064 ORTHO05D006783 2.4e-07 58.5 87 44.8
Mapoly0077s0027 Marchantia polymorpha HOM05D000064 ORTHO05D006783 2.4e-07 58.5 85 44.7
Cpa.g.sc53.125 Carica papaya HOM05D000064 ORTHO05D006783 5.4e-07 57.4 89 41.6
arahy.Tifrunner.gnm1.ann1.AF6N0J Arachis hypogaea HOM05D000064 ORTHO05D006783 7.0e-07 57.0 85 44.7
arahy.Tifrunner.gnm1.ann1.KQ3H1K Arachis hypogaea HOM05D000064 ORTHO05D006783 7.0e-07 57.0 85 44.7
Nn3g19714 Nelumbo nucifera HOM05D000064 ORTHO05D006783 7.0e-07 57.0 86 40.7
Pp3c11_7740 Physcomitrium patens HOM05D000064 ORTHO05D006783 7.0e-07 57.0 61 57.4
MBI18_g10195_MAGBIO Magnolia biondii HOM05D000064 ORTHO05D006783 1.2e-06 56.2 60 53.3
BolC8t50613H Brassica oleracea HOM05D000215 ORTHO05D001676 2.0e-06 55.5 92 40.2
AagrBONN_evm.TU.Sc2ySwM_228.4575 Anthoceros agrestis HOM05D000064 ORTHO05D006783 2.7e-06 55.1 85 43.5
Gorai.011G237500 Gossypium raimondii HOM05D000064 ORTHO05D006783 2.7e-06 55.1 63 52.4
PSO339G1133 Papaver somniferum HOM05D000064 ORTHO05D006783 2.7e-06 55.1 59 55.9
Pp3c1_7170 Physcomitrium patens HOM05D000064 ORTHO05D006783 4.6e-06 54.3 86 44.2
SMO137G0038 Selaginella moellendorffii HOM05D000064 ORTHO05D006783 4.6e-06 54.3 53 56.6
Sed0022635 Sechium edule HOM05D000064 ORTHO05D006783 6.0e-06 53.9 68 48.5


User provided reference genes

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