Gene: AT3G54840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54840
  • Transcript Identifier AT3G54840.1
  • Gene Type Coding gene
  • Location Chr3 : 20318597-20320782 : positive

Gene Family Information

  • ID HOM05D000064
  • #Genes/#Species 3993/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54840.1
  • symbol ARA6
  • uniprot Q9CB01

Descriptions

  • Description Ras-related small GTP-binding family protein
  • Computational description ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: endosome, external side of endosome membrane, early endosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT4G19640.1); Has 26142 Blast hits to 26098 proteins in 715 species: Archae - 24; Bacteria - 131; Metazoa - 13692; Fungi - 3685; Plants - 2883; Viruses - 20; Other Eukaryotes - 5707 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006886
IBA
Gene Ontologyintracellular protein transport1
GO:0006897
IEA
GOA Databaseendocytosis
GO:0045022
IMP
Gene Ontologyearly endosome to late endosome transport2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IDA
IBA
IEA
Gene OntologyGTPase activity1 2
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
Gene OntologyGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0005768
IEA
GOA Databaseendosome
GO:0005768
IDA
Gene Ontologyendosome4
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0010008
IEA
GOA Databaseendosome membrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0031901
IEA
GOA Databaseearly endosome membrane
GO:0012505
IBA
Gene Ontologyendomembrane system1
GO:0005829
HDA
Gene Ontologycytosol5
GO:0010009
IDA
Gene Ontologycytoplasmic side of endosome membrane2
GO:0005769
IDA
Gene Ontologyearly endosome2
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005225 Small GTP-binding protein domain
IPR001806 Small GTPase
Mapman id Description
22.3.4.1.6 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.F-class RAB GTPase
22.3.4.5.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.small GTPase (RAB5)