Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 6.7e-199 697.2 366 100.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.8e-181 637.9 386 85.2
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.3e-181 637.5 391 84.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.0e-178 630.2 366 87.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.5e-166 589.7 366 81.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.2e-164 582.0 366 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.9e-156 556.2 332 83.7
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.2e-156 555.4 333 82.9
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 6.0e-155 551.2 327 85.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.0e-154 548.9 334 82.0
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 6.6e-154 547.7 332 83.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-153 547.0 328 83.5
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.5e-153 546.6 328 83.2
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.5e-153 546.6 352 79.3
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.5e-153 545.8 359 77.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 4.3e-153 545.0 363 77.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 5.6e-153 544.7 352 77.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 9.5e-153 543.9 332 80.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.7e-152 541.6 329 83.0
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-151 540.4 330 82.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.4e-151 540.0 332 80.7
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.4e-151 540.0 323 84.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.8e-151 539.7 323 83.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.3e-151 539.3 327 82.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.1e-151 538.9 324 83.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.0e-151 538.5 331 81.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.2e-151 538.1 329 82.1
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.5e-150 536.6 324 82.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 2.0e-150 536.2 332 80.4
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.0e-150 536.2 328 82.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.0e-150 536.2 326 82.5
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-150 535.4 353 77.6
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.4e-150 535.4 324 82.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 9.8e-150 533.9 361 75.1
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.7e-149 533.1 362 74.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.7e-149 531.9 330 81.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.7e-149 531.9 352 75.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.7e-149 531.9 352 75.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.9e-149 531.6 333 79.0
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 4.9e-149 531.6 359 76.3
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.9e-149 531.6 326 81.0
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 6.4e-149 531.2 326 81.3
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 8.3e-149 530.8 332 80.1
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.1e-148 530.4 329 80.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.4e-148 529.3 332 78.6
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.2e-148 528.9 333 79.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 4.1e-148 528.5 334 79.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.1e-148 528.5 324 82.4
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.4e-148 528.1 331 80.4
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 9.2e-148 527.3 340 78.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.2e-147 526.9 322 81.1
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.6e-147 526.6 352 76.1
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.6e-147 526.6 326 80.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-147 526.2 328 80.5
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.7e-147 525.8 324 81.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.6e-147 525.0 326 80.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.6e-147 525.0 331 78.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 6.0e-147 524.6 323 82.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 6.0e-147 524.6 331 78.9
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 6.0e-147 524.6 333 79.9
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.0e-146 523.9 323 80.8
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-146 523.5 331 79.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.3e-146 523.5 331 78.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.3e-146 522.7 333 79.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.0e-146 522.3 331 77.9
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.0e-146 522.3 328 80.8
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.9e-146 521.9 333 79.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.1e-146 521.5 333 79.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 6.6e-146 521.2 334 79.9
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-145 520.4 331 77.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.5e-145 520.0 332 77.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.9e-145 519.6 333 78.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.5e-145 519.2 340 78.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.3e-145 518.8 330 79.4
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.3e-145 518.8 329 79.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.3e-145 518.8 322 80.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 5.6e-145 518.1 318 82.7
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 9.5e-145 517.3 331 77.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.1e-144 516.2 346 75.1
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.1e-144 516.2 411 66.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 3.6e-144 515.4 333 78.4
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 3.6e-144 515.4 353 74.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 3.6e-144 515.4 398 68.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.7e-144 515.0 334 77.8
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.3e-143 512.7 324 79.3
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.1e-143 512.3 361 73.1
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 5.2e-143 511.5 332 78.3
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-142 510.4 323 79.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.5e-142 510.0 332 77.7
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-142 510.0 332 77.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.0e-142 509.6 332 77.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.6e-142 509.2 348 75.6
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.6e-142 509.2 325 76.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.6e-142 509.2 354 73.7
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.4e-142 508.4 332 77.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.4e-142 508.4 332 77.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 7.6e-142 507.7 332 77.1
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.6e-142 507.7 331 76.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 9.9e-142 507.3 338 76.3
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.3e-141 506.9 325 78.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.3e-141 506.9 332 77.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-141 506.9 323 79.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-141 506.5 331 76.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.7e-141 506.5 333 77.8
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.7e-141 506.5 323 79.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.2e-141 506.1 332 77.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.2e-141 506.1 325 77.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-141 506.1 325 77.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.2e-141 506.1 332 77.1
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.7e-141 505.4 326 78.8
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 6.4e-141 504.6 325 78.5
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 6.4e-141 504.6 325 78.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 6.4e-141 504.6 332 77.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 8.4e-141 504.2 332 77.1
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-140 502.7 332 76.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.1e-140 501.9 332 76.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.1e-140 501.9 323 78.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.1e-140 501.9 323 78.6
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.1e-140 501.9 348 73.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 5.4e-140 501.5 332 76.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 7.1e-140 501.1 336 77.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.1e-139 499.6 348 73.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.7e-139 499.2 327 77.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.6e-139 498.4 381 68.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.6e-139 498.4 348 73.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-138 497.3 322 76.7
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.3e-138 496.9 423 64.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-135 486.5 325 75.7
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-135 486.5 325 75.7
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.4e-134 481.9 300 79.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.2e-133 479.6 323 76.2
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-133 479.2 285 83.2
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.8e-133 478.8 285 82.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.2e-132 475.3 333 73.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.6e-131 473.4 313 77.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.1e-131 473.0 332 72.6
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 6.6e-130 468.0 303 78.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 8.7e-130 467.6 332 72.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-129 467.2 312 76.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.3e-129 465.7 332 72.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.8e-127 459.9 322 73.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.1e-127 459.1 322 70.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.6e-126 456.1 323 73.4
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.4e-126 455.3 311 74.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.4e-126 455.3 307 76.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.1e-124 450.7 299 76.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.2e-123 447.2 300 75.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.0e-109 401.0 297 70.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 4.1e-103 379.0 314 61.8
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.6e-102 376.3 242 80.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.8e-101 372.5 248 77.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 8.5e-101 371.3 238 79.8
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 9.0e-95 351.3 290 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.4e-87 327.4 233 73.8
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.8e-79 300.4 271 61.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 6.5e-69 265.4 199 69.8
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 4.2e-68 262.7 167 80.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.2e-67 261.2 310 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.6e-62 244.2 335 46.9
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.1e-44 184.9 112 76.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.3e-42 177.2 113 77.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.4e-39 167.2 171 58.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.4e-39 167.2 171 58.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.4e-39 167.2 171 58.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.4e-33 146.7 357 33.3
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.3e-32 144.8 100 70.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.9e-32 142.9 99 70.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.9e-32 142.9 99 70.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.2e-31 140.2 99 69.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 5.4e-31 139.4 98 69.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 4.6e-30 136.3 103 66.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.3e-29 134.0 104 64.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 9.5e-28 128.6 103 62.1
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.1e-18 98.6 64 73.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.4e-17 93.2 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.4e-15 88.2 49 85.7
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.2e-15 87.0 61 77.0
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.4e-07 61.6 35 74.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.6e-06 58.2 35 71.4


User provided reference genes

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