Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 5.3e-148 527.7 275 100.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.0e-122 443.7 252 90.1
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 3.5e-115 418.7 266 83.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.1e-113 413.7 267 81.3
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.7e-109 399.8 311 68.8
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 2.6e-102 375.9 305 66.2
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.1e-100 370.5 252 79.0
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 1.1e-100 370.5 305 65.6
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 2.0e-99 366.3 305 65.9
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.3e-98 362.8 303 65.3
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.1e-97 360.5 305 63.9
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 1.5e-97 360.1 305 63.9
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.2e-96 357.1 305 64.3
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 3.6e-96 355.5 261 70.1
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 3.6e-96 355.5 261 70.1
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 6.1e-96 354.8 303 63.7
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 1.8e-95 353.2 248 73.0
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 1.8e-95 353.2 252 71.8
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 4.0e-95 352.1 306 64.1
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 5.2e-95 351.7 305 63.3
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.8e-95 351.3 305 62.3
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 8.9e-95 350.9 304 64.1
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 8.9e-95 350.9 300 63.7
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 8.9e-95 350.9 252 72.2
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 1.5e-94 350.1 305 62.3
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.5e-94 350.1 252 71.8
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 2.0e-94 349.7 252 71.8
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 2.6e-94 349.4 305 63.0
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 3.4e-94 349.0 305 62.6
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 5.8e-94 348.2 252 71.4
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 7.5e-94 347.8 252 73.4
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 9.8e-94 347.4 252 71.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 9.8e-94 347.4 307 61.9
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 4.9e-93 345.1 308 61.7
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 2.4e-92 342.8 252 70.6
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 3.2e-92 342.4 252 70.6
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 3.2e-92 342.4 303 61.7
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.1e-92 342.0 252 70.2
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 5.4e-92 341.7 308 61.7
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 5.4e-92 341.7 305 62.0
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 9.2e-92 340.9 303 61.1
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 1.2e-91 340.5 250 71.6
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.7e-91 339.3 261 69.0
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 1.3e-90 337.0 252 71.0
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.3e-90 337.0 252 70.6
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.7e-90 336.7 272 67.3
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.0e-90 335.9 325 60.3
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 5.0e-90 335.1 308 61.4
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 5.0e-90 335.1 252 69.0
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.1e-89 334.0 252 69.4
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.5e-89 333.6 252 68.7
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.5e-89 333.6 308 60.7
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.5e-89 333.6 259 68.3
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 1.9e-89 333.2 252 69.8
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.3e-89 332.4 306 61.4
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 4.3e-89 332.0 308 60.4
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 9.5e-89 330.9 307 59.9
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 1.6e-88 330.1 252 69.4
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.1e-88 329.7 305 60.0
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.6e-88 328.9 307 59.9
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 4.7e-88 328.6 305 59.7
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.2e-86 323.9 253 68.0
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 1.2e-86 323.9 253 68.4
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.2e-86 323.9 245 69.0
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.5e-86 323.6 307 59.3
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.5e-86 323.6 253 67.6
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 1.5e-86 323.6 253 68.0
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 4.4e-86 322.0 307 59.0
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 5.8e-86 321.6 253 67.6
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 7.5e-86 321.2 255 67.1
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 7.5e-86 321.2 307 58.6
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 7.5e-86 321.2 303 57.8
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.3e-85 320.5 287 61.7
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 4.9e-85 318.5 307 59.0
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.1e-84 317.4 305 58.4
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.4e-84 316.2 299 57.9
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 2.4e-84 316.2 233 70.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 2.1e-83 313.2 344 54.1
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.7e-83 312.8 273 63.4
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.0e-82 310.8 243 67.9
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.0e-82 310.8 246 66.3
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 3.0e-82 309.3 243 66.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 5.1e-82 308.5 324 55.9
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 1.1e-81 307.4 252 63.9
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.9e-81 306.6 252 63.1
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.9e-81 306.6 305 56.4
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.5e-81 306.2 317 55.8
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 7.3e-81 304.7 305 55.7
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 1.6e-80 303.5 263 60.5
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 2.3e-79 299.7 307 55.7
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 2.3e-79 299.7 307 55.4
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 2.2e-77 293.1 250 61.6
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 6.4e-77 291.6 261 60.9
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.4e-77 291.2 246 65.4
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 7.1e-76 288.1 226 66.8
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.3e-74 283.9 257 59.5
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 3.9e-74 282.3 223 67.7
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 5.6e-73 278.5 305 54.4
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.3e-73 278.1 411 44.5
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 5.8e-70 268.5 259 59.1
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.8e-69 265.8 228 63.6
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 1.9e-68 263.5 297 52.9
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 3.5e-67 259.2 251 56.2
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 7.8e-67 258.1 252 54.0
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 6.6e-66 255.0 231 59.3
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 4.0e-63 245.7 156 78.2
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.4e-62 242.3 209 61.7
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.3e-61 240.7 190 67.4
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.7e-61 240.4 243 57.6
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 8.7e-58 228.0 189 66.1
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 6.4e-53 211.8 186 61.8
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 3.9e-50 202.6 117 82.1
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.4e-47 194.1 211 54.0
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.0e-45 188.0 96 93.8
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 1.3e-45 187.6 172 59.9
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 4.6e-43 179.1 261 42.5
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.5e-41 174.1 148 59.5
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 2.0e-38 163.7 96 79.2
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.2e-29 133.7 157 51.0
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 2.9e-29 133.3 78 83.3
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.9e-28 130.6 133 57.1
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 5.1e-26 122.5 70 82.9
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 8.2e-24 115.2 168 43.5
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 6.5e-21 105.5 121 49.6
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 2.6e-17 93.6 252 30.6
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 3.3e-17 93.2 221 30.3
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 7.4e-17 92.0 99 54.5
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 4.8e-16 89.4 111 49.5
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 1.0e-13 81.6 96 43.8
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.5e-12 77.0 302 26.8
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.8e-10 68.6 101 45.5
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.8e-10 68.6 95 45.3
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.8e-07 60.8 92 44.6
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 5.9e-06 55.8 82 40.2


User provided reference genes

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