Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 1.2e-217 759.6 388 100.0
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 1.7e-75 287.3 338 51.8
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 6.3e-54 215.7 367 41.1
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.0e-40 170.2 115 67.8
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.5e-39 167.9 329 33.1
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 3.4e-39 166.8 301 34.2
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 8.3e-38 162.2 340 33.5
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 2.7e-36 157.1 213 40.4
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 2.7e-36 157.1 184 42.4
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 6.5e-35 152.5 171 43.9
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 6.5e-35 152.5 152 48.7
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 8.5e-35 152.1 329 32.2
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 8.5e-35 152.1 113 57.5
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 1.1e-34 151.8 110 55.5
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 1.1e-34 151.8 152 48.7
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 1.9e-34 151.0 134 52.2
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 1.9e-34 151.0 155 45.8
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.9e-34 151.0 275 34.5
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 2.5e-34 150.6 166 44.6
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 3.2e-34 150.2 112 55.4
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 4.2e-34 149.8 360 34.2
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 5.5e-34 149.4 336 29.2
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 5.5e-34 149.4 141 51.1
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 5.5e-34 149.4 116 53.4
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 7.2e-34 149.1 190 42.6
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 7.2e-34 149.1 197 40.1
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.2e-33 148.3 139 50.4
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 1.6e-33 147.9 164 45.1
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 2.1e-33 147.5 307 33.2
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 2.7e-33 147.1 159 42.1
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 3.6e-33 146.7 292 30.1
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 4.7e-33 146.4 216 39.8
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 4.7e-33 146.4 192 39.6
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 6.1e-33 146.0 110 51.8
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 6.1e-33 146.0 153 46.4
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 8.0e-33 145.6 120 53.3
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 8.0e-33 145.6 156 43.6
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 1.0e-32 145.2 204 43.1
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.4e-32 144.8 109 53.2
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 1.4e-32 144.8 177 41.8
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-32 144.8 177 41.8
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-32 144.8 177 41.8
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 1.8e-32 144.4 123 51.2
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 1.8e-32 144.4 123 51.2
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.8e-32 144.4 153 45.1
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.8e-32 144.4 165 44.8
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.3e-32 144.1 156 46.2
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.3e-32 144.1 156 46.2
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 2.3e-32 144.1 173 41.0
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 2.3e-32 144.1 327 31.5
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.3e-32 144.1 170 42.4
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 2.3e-32 144.1 347 32.3
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 2.3e-32 144.1 363 31.1
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 3.0e-32 143.7 110 51.8
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 3.0e-32 143.7 136 47.1
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 3.0e-32 143.7 175 44.0
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 4.0e-32 143.3 132 47.0
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 4.0e-32 143.3 344 29.4
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 5.2e-32 142.9 308 31.2
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 5.2e-32 142.9 298 34.6
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 6.8e-32 142.5 214 36.9
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 6.8e-32 142.5 145 43.4
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 6.8e-32 142.5 119 53.8
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.8e-32 142.1 111 55.0
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 8.8e-32 142.1 125 50.4
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 1.2e-31 141.7 198 38.4
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.5e-31 141.4 140 47.1
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 2.0e-31 141.0 154 46.8
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 2.6e-31 140.6 177 42.9
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 2.6e-31 140.6 127 48.0
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 2.6e-31 140.6 134 47.0
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.6e-31 140.6 184 39.7
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 2.6e-31 140.6 127 52.8
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 3.4e-31 140.2 196 40.8
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 4.4e-31 139.8 341 30.5
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 4.4e-31 139.8 110 54.5
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.4e-31 139.8 125 48.8
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 4.4e-31 139.8 114 54.4
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 5.7e-31 139.4 185 39.5
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 5.7e-31 139.4 126 50.0
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 5.7e-31 139.4 108 56.5
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 5.7e-31 139.4 165 41.2
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 5.7e-31 139.4 132 48.5
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 9.8e-31 138.7 155 45.2
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 9.8e-31 138.7 104 55.8
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.7e-30 137.9 213 37.6
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 2.2e-30 137.5 182 41.8
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 2.2e-30 137.5 110 52.7
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.8e-30 137.1 121 47.9
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 3.7e-30 136.7 171 39.8
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 3.7e-30 136.7 171 39.8
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 4.9e-30 136.3 121 47.9
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.9e-30 136.3 114 52.6
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 6.3e-30 136.0 114 50.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 6.3e-30 136.0 130 46.9
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 8.3e-30 135.6 178 42.1
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 8.3e-30 135.6 172 41.3
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.3e-30 135.6 177 40.1
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 1.1e-29 135.2 111 52.3
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 1.4e-29 134.8 110 50.9
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-29 134.8 115 47.8
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 1.8e-29 134.4 220 36.4
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.8e-29 134.4 124 46.8
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 2.4e-29 134.0 171 41.5
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.4e-29 134.0 176 36.4
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 2.4e-29 134.0 192 37.5
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.4e-29 132.9 176 36.4
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.0e-29 132.5 115 47.0
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 7.0e-29 132.5 107 49.5
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 9.1e-29 132.1 113 47.8
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 9.1e-29 132.1 110 50.9
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 9.1e-29 132.1 106 50.0
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.6e-28 131.3 221 34.4
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 2.0e-28 131.0 159 39.6
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 2.7e-28 130.6 175 41.1
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 3.5e-28 130.2 160 42.5
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 4.5e-28 129.8 109 52.3
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 4.5e-28 129.8 107 50.5
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.5e-28 129.8 215 36.3
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 7.7e-28 129.0 109 51.4
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 1.3e-27 128.3 153 42.5
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 1.3e-27 128.3 102 50.0
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.7e-27 127.9 184 39.7
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 1.7e-27 127.9 223 35.0
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 1.7e-27 127.9 102 49.0
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 2.3e-27 127.5 264 33.3
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 2.9e-27 127.1 123 48.0
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 5.0e-27 126.3 109 50.5
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 5.0e-27 126.3 109 50.5
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 5.0e-27 126.3 109 50.5
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 5.0e-27 126.3 109 50.5
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 5.0e-27 126.3 106 50.0
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 5.0e-27 126.3 165 40.0
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 8.6e-27 125.6 147 41.5
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 1.1e-26 125.2 110 47.3
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 4.2e-26 123.2 109 49.5
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 5.5e-26 122.9 144 41.0
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 9.5e-26 122.1 150 42.0
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 9.5e-26 122.1 150 42.0
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 9.5e-26 122.1 110 45.5
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.6e-25 121.3 113 44.2
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.8e-25 120.6 128 43.0
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 3.6e-25 120.2 102 52.9
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 1.8e-24 117.9 107 46.7
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 4.0e-24 116.7 112 49.1
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 6.8e-24 115.9 123 46.3
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 1.2e-23 115.2 85 55.3
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.2e-23 115.2 113 42.5
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 2.6e-23 114.0 112 46.4
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 3.4e-23 113.6 111 45.0
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 4.9e-22 109.8 105 46.7
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.4e-21 108.2 104 42.3
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 2.0e-20 104.4 97 45.4
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 2.0e-20 104.4 97 45.4
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.7e-20 104.0 98 45.9
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 5.9e-20 102.8 80 56.2
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.1e-18 98.6 76 55.3
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 3.3e-18 97.1 181 31.5
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 5.6e-18 96.3 155 33.5
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 9.5e-18 95.5 146 34.9
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 2.1e-17 94.4 220 29.1
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 8.0e-17 92.4 101 35.6
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 8.3e-14 82.4 363 25.1
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 3.5e-12 77.0 112 28.6
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.9e-10 71.2 90 32.2
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 3.3e-10 70.5 56 53.6
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.6e-09 68.2 113 28.3
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 3.6e-09 67.0 103 33.0
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 3.6e-09 67.0 104 22.1
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 6.2e-09 66.2 121 33.1
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.8e-08 64.7 48 56.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 3.4e-07 60.5 111 27.9
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 4.4e-07 60.1 111 27.9
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 9.8e-07 58.9 87 34.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 9.8e-07 58.9 118 28.0
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 1.3e-06 58.5 84 33.3
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 2.2e-06 57.8 119 27.7
Cre09.g394547 Chlamydomonas reinhardtii HOM05D020634 ORTHO05D003935 3.7e-06 57.0 58 39.7
MCO16G384 Micromonas commoda HOM05D003809 ORTHO05D003935 8.3e-06 55.8 116 26.7


User provided reference genes

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