Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 4.5e-65 251.1 129 100.0
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 4.5e-49 198.0 129 77.5
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 8.5e-48 193.7 123 78.9
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.5e-47 193.0 122 77.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.2e-43 179.1 127 66.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.5e-41 171.4 128 67.2
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 8.5e-40 167.2 129 62.8
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.9e-39 166.0 106 78.3
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.5e-39 164.5 126 63.5
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.1e-38 162.5 128 61.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.6e-38 161.8 125 63.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.6e-38 161.8 128 59.4
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.6e-38 161.8 123 61.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 6.1e-38 161.0 118 65.3
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.3e-37 159.1 123 60.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.3e-37 159.1 121 62.8
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.0e-37 158.7 130 59.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.0e-37 158.3 130 59.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.0e-37 158.3 128 57.8
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.2e-37 157.9 127 62.2
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 6.8e-37 157.5 128 60.9
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.8e-37 157.5 134 59.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.2e-36 156.8 128 57.8
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.6e-36 155.6 115 61.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.7e-36 154.5 126 61.9
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 5.7e-36 154.5 125 61.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.3e-35 153.3 130 60.8
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.7e-35 152.9 126 60.3
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-35 152.9 128 58.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.2e-35 152.5 129 59.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.8e-35 152.1 129 59.7
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.7e-35 151.8 128 57.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 6.3e-35 151.0 124 61.3
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.4e-34 149.8 121 61.2
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.4e-34 149.8 128 62.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.1e-34 148.7 125 59.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.1e-34 148.7 123 62.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 7.0e-34 147.5 147 53.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.2e-33 146.7 123 61.8
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.0e-33 146.0 134 57.5
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.0e-33 146.0 123 61.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.0e-33 146.0 131 58.8
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.5e-33 145.2 123 58.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.5e-33 145.2 121 60.3
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.5e-33 145.2 123 56.1
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.3e-32 143.3 132 56.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.7e-32 142.9 128 53.9
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.3e-32 142.5 130 57.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.3e-32 142.5 121 58.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.3e-32 142.5 133 57.1
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.9e-32 142.1 123 58.5
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.9e-32 142.1 124 59.7
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 3.8e-32 141.7 121 57.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 3.8e-32 141.7 122 59.8
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.0e-32 141.4 128 55.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 6.5e-32 141.0 133 56.4
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 6.5e-32 141.0 121 57.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.5e-31 139.8 123 60.2
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.5e-31 139.0 123 59.3
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 4.2e-31 138.3 129 55.8
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 5.5e-31 137.9 119 60.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 7.2e-31 137.5 129 55.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 9.5e-31 137.1 121 57.0
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.2e-30 136.7 125 56.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-30 136.3 128 53.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.6e-30 136.3 121 55.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.6e-30 136.3 136 52.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.1e-30 136.0 147 50.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.6e-30 135.2 121 55.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.4e-29 133.3 119 57.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.8e-29 132.9 143 51.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.0e-29 131.7 121 56.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.8e-29 131.0 130 53.1
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 8.8e-29 130.6 118 56.8
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.2e-28 130.2 131 55.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.5e-28 129.8 126 51.6
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.5e-28 129.8 125 52.8
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.0e-28 129.4 129 50.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.0e-28 129.4 126 53.2
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.4e-28 128.6 89 70.8
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 3.4e-28 128.6 128 47.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.7e-28 127.9 123 52.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.5e-28 127.5 87 71.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 9.8e-28 127.1 129 51.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.8e-28 127.1 126 50.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-27 126.3 122 54.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.7e-27 126.3 119 52.1
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-27 125.6 119 53.8
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.8e-27 125.6 122 53.3
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.8e-27 125.6 124 52.4
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 3.7e-27 125.2 121 53.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.7e-27 125.2 120 54.2
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 4.9e-27 124.8 120 54.2
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 4.9e-27 124.8 121 53.7
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 4.9e-27 124.8 120 54.2
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 8.3e-27 124.0 116 55.2
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-26 123.2 120 53.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.4e-26 123.2 120 53.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 5.4e-26 121.3 91 64.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 9.2e-26 120.6 121 49.6
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 3.5e-25 118.6 122 50.0
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.5e-25 118.6 91 64.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.3e-24 116.7 77 74.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-24 116.3 120 50.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-24 116.3 120 50.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.7e-24 116.3 120 50.8
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.8e-24 115.2 122 50.0
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.8e-24 115.2 126 50.8
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 5.0e-24 114.8 129 47.3
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 5.0e-24 114.8 129 51.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.9e-23 112.8 89 65.2
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-23 112.1 123 48.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 5.6e-23 111.3 127 48.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 9.5e-23 110.5 123 48.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 9.5e-23 110.5 123 48.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 9.5e-23 110.5 91 56.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.6e-22 108.6 126 47.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 3.6e-22 108.6 119 47.1
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.6e-22 108.6 119 47.1
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 3.6e-22 108.6 124 44.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 4.7e-22 108.2 118 49.2
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 6.1e-22 107.8 123 45.5
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.0e-21 107.1 119 49.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.0e-21 105.5 83 61.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 3.0e-21 105.5 119 47.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 5.2e-21 104.8 113 50.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.2e-21 104.8 119 47.1
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.9e-21 104.0 121 46.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.0e-20 102.8 90 61.1
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.4e-20 102.1 132 43.9
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.4e-20 101.7 132 43.9
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.4e-20 101.7 132 43.9
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.7e-20 101.3 119 45.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.3e-19 100.1 132 43.2
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-18 97.1 107 50.5
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.6e-17 93.2 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 4.6e-17 91.7 122 42.6
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.6e-17 91.7 87 51.7
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.7e-16 89.7 94 52.1
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.5e-15 86.7 93 47.3
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.9e-15 86.3 79 49.4
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.6e-15 84.7 122 41.8
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 5.6e-15 84.7 135 39.3
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.3e-15 84.3 124 41.9
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 9.5e-15 84.0 128 38.3
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.7e-14 81.6 126 39.7
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.2e-13 78.2 69 59.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.4e-12 75.1 52 69.2
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.7e-11 72.0 76 48.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-11 72.0 119 37.8
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.1e-10 68.6 91 41.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.2e-09 67.0 80 40.0
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 7.8e-09 64.3 71 46.5
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 3.0e-08 62.4 74 45.9
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.3e-07 58.5 43 62.8
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.3e-07 57.8 40 72.5
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 9.5e-07 57.4 56 51.8
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 4.7e-06 55.1 40 62.5


User provided reference genes

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