Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 2535.0 1293 100.0
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 2041.2 1295 80.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1829.3 1290 74.3
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1722.6 1335 66.7
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1697.2 1313 65.2
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1665.6 1334 64.8
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1662.9 1273 66.8
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1627.8 1399 61.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1622.1 1337 63.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1612.4 1308 63.9
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1603.6 1335 62.9
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1602.4 1336 63.8
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1595.1 1342 61.3
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1593.6 1336 63.3
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1585.9 1334 62.3
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1584.3 1331 61.8
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1581.6 1346 62.3
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1581.2 1477 58.8
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1580.1 1306 62.6
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1579.3 1334 61.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1575.1 1334 62.1
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1571.2 1331 61.8
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1569.7 1312 61.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1563.9 1255 64.4
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1562.7 1336 61.7
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1559.3 1338 61.0
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1558.9 1341 62.3
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1343 61.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1558.1 1342 60.7
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1542.3 1328 59.6
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1538.9 1333 59.8
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1528.8 1331 60.7
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1525.8 1333 60.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1522.3 1333 59.1
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1521.9 1336 60.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1519.2 1331 60.0
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1518.4 1333 59.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1518.1 1333 58.8
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1510.7 1333 58.4
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1505.3 1332 59.5
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1500.0 1337 58.5
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1498.0 1337 58.7
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1491.9 1328 59.4
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1491.5 1340 58.3
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1490.3 1334 57.9
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1489.6 1348 57.4
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1486.9 1337 58.7
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1485.3 1379 57.7
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1485.3 1337 58.1
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1483.0 1333 58.5
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1482.2 1331 59.7
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1480.7 1331 58.0
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1473.0 1343 58.2
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1473.0 1331 57.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1472.2 1335 57.4
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1470.7 1329 57.6
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1468.8 1339 59.8
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1468.0 1332 57.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1466.4 1334 57.2
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1462.2 1332 57.0
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1458.7 1332 58.1
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1458.4 1330 57.5
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1456.0 1332 57.6
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1453.7 1342 57.5
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1452.2 1331 57.9
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1450.6 1216 62.2
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1449.9 1335 57.5
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1448.0 1333 56.9
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1446.8 1330 57.4
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1443.3 1216 61.8
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1431.0 1330 57.1
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1430.6 1332 57.1
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1406.7 1232 60.0
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1401.3 1339 55.4
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1397.1 1325 57.1
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1335.9 1330 54.7
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1333.5 1332 53.2
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1331.6 1326 54.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1322.4 1325 53.4
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1307.4 1321 53.4
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1286.2 1319 52.9
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1285.4 1302 54.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1284.2 1321 53.4
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1282.7 1322 53.6
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1280.0 1321 53.3
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1276.9 1324 52.5
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1276.9 1324 52.5
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1276.2 1330 52.0
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1243.0 1298 52.4
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1207.6 1301 50.7
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1203.7 1309 50.6
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1181.4 1341 48.2
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1179.9 1069 58.0
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1152.9 986 62.5
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1133.2 900 64.6
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1126.3 986 59.9
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1122.5 859 67.3
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 5.3e-299 1031.6 1223 48.1
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.2e-261 907.5 1274 43.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 4.7e-255 885.6 1345 39.6
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.3e-238 830.1 1292 40.5
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.2e-235 819.7 1268 38.8
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 6.2e-223 778.9 952 47.0
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 3.8e-220 769.6 1315 36.8
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.7e-217 760.8 1125 40.5
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.4e-158 563.1 583 50.9
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.6e-157 561.6 481 60.1
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.9e-151 540.0 583 52.5
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.4e-113 415.6 1092 29.6
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 2.0e-96 358.6 290 61.0
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 7.6e-96 356.7 354 55.6
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.8e-95 354.4 328 55.8
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.8e-92 345.5 318 57.2
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.1e-81 308.1 1057 27.9
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 4.3e-75 287.7 264 60.6
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 8.5e-63 246.9 228 54.8
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.2e-61 243.0 202 61.4
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 2.8e-58 231.9 303 42.9
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.2e-54 218.4 185 60.5
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.8e-50 205.3 145 71.7
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 8.2e-50 203.8 294 41.8
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.2e-35 156.8 129 63.6
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 7.8e-32 144.1 119 59.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 3.3e-30 138.7 674 25.4
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.2e-21 110.2 119 51.3
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 8.9e-20 104.0 96 54.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 7.0e-17 94.4 108 49.1
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.0e-15 90.5 79 57.0
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.1e-09 68.6 74 55.4
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 7.3e-06 57.8 72 52.8
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 7.3e-06 57.8 72 52.8


User provided reference genes

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