Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.1e-166 589.0 292 100.0
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 9.3e-159 563.5 292 94.9
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.1e-154 550.1 292 92.5
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 9.9e-153 543.5 289 91.0
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-150 535.8 290 90.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 88.0
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.0e-149 533.5 290 89.3
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.0e-149 533.5 292 87.7
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.3e-149 533.1 292 87.3
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 3.0e-149 531.9 289 88.6
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 3.9e-149 531.6 290 88.3
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.9e-149 531.6 292 88.0
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 5.1e-149 531.2 290 88.6
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 6.6e-149 530.8 290 88.3
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 8.7e-149 530.4 292 88.4
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 8.7e-149 530.4 297 87.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.5e-148 529.6 292 88.4
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.5e-148 529.6 290 87.9
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 1.9e-148 529.3 292 87.7
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 3.3e-148 528.5 290 87.9
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 4.3e-148 528.1 290 87.9
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.6e-148 527.7 292 88.0
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 7.4e-148 527.3 292 88.4
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.3e-147 526.6 292 87.3
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.6e-147 526.2 292 86.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 2.1e-147 525.8 289 87.5
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.6e-147 525.0 289 87.5
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 3.6e-147 525.0 292 87.7
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.1e-146 523.5 293 86.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.1e-146 523.5 285 87.4
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 1.1e-146 523.5 286 88.5
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 1.1e-146 523.5 286 88.5
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.4e-146 523.1 289 87.9
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.4e-146 523.1 289 88.2
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.4e-146 523.1 285 87.0
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 88.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 292 87.3
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 292 87.3
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.8e-146 522.7 289 86.9
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.4e-146 522.3 289 86.5
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.1e-146 521.9 292 86.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.1e-146 521.9 288 86.5
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 3.1e-146 521.9 290 85.9
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 4.0e-146 521.5 285 87.7
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 4.0e-146 521.5 292 86.3
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 9.0e-146 520.4 292 86.0
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 9.0e-146 520.4 290 86.2
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 87.3
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.2e-145 520.0 275 90.9
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.2e-145 520.0 285 87.4
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-145 519.6 285 87.4
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.5e-145 519.6 322 79.2
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 2.0e-145 519.2 289 86.5
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 2.0e-145 519.2 294 86.7
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.6e-145 518.8 292 86.0
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.6e-145 518.8 292 86.0
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-145 518.8 288 87.2
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.4e-145 518.5 292 85.6
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.4e-145 518.5 292 85.6
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 5.8e-145 517.7 289 86.5
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 7.6e-145 517.3 292 85.3
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 9.9e-145 516.9 292 85.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.3e-144 516.5 292 84.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 85.3
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 85.3
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 86.3
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 85.3
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 2.9e-144 515.4 292 85.6
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.9e-144 515.4 288 86.1
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.9e-144 515.4 289 86.9
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-144 515.0 288 86.5
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 4.9e-144 514.6 290 87.2
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 8.4e-144 513.8 289 86.2
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 1.1e-143 513.5 290 86.9
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.1e-143 513.5 292 84.9
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 1.1e-143 513.5 292 84.9
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.4e-143 513.1 290 86.6
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.4e-143 513.1 285 87.0
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.9e-143 512.7 289 86.2
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 2.4e-143 512.3 292 86.3
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 3.2e-143 511.9 289 85.1
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 4.2e-143 511.5 297 83.5
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.1e-143 510.8 289 85.1
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.1e-142 509.2 295 85.4
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.1e-142 509.2 292 84.9
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 3.5e-142 508.4 288 84.4
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.0e-141 506.9 288 83.7
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.3e-141 506.5 289 85.1
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.3e-141 506.5 313 79.6
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.8e-141 506.1 289 84.1
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.8e-141 506.1 289 84.1
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 2.3e-141 505.8 288 83.7
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.1e-141 504.6 292 84.9
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 8.7e-141 503.8 288 83.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 5.6e-140 501.1 271 89.7
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 5.6e-140 501.1 273 88.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.1e-139 499.2 274 89.4
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 2.1e-139 499.2 292 84.6
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.1e-139 499.2 292 83.6
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.7e-139 498.4 366 69.7
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.4e-138 495.7 291 84.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 9.0e-138 493.8 289 83.0
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.4e-137 491.9 290 82.4
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.2e-136 489.2 280 86.4
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 4.9e-136 488.0 273 86.1
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.9e-135 486.1 315 77.1
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.9e-135 486.1 297 81.8
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.9e-135 486.1 297 81.8
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.5e-135 485.7 292 82.9
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.5e-135 485.7 273 86.4
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.2e-135 485.3 300 80.0
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 2.1e-134 482.6 271 87.8
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 2.1e-134 482.6 274 84.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.1e-134 482.6 273 86.1
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.6e-134 481.5 270 85.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.0e-133 480.3 286 81.8
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 2.3e-133 479.2 274 86.5
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 3.9e-133 478.4 283 83.0
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.5e-132 476.5 274 83.6
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 2.5e-132 475.7 271 86.3
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.1e-131 472.6 262 87.4
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.8e-130 469.5 292 80.1
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.5e-129 464.9 308 77.3
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 5.9e-129 464.5 257 87.9
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 7.6e-129 464.2 257 87.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.3e-128 463.4 322 73.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 3.2e-127 458.8 289 76.1
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.1e-126 456.1 255 86.7
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 3.6e-126 455.3 271 80.8
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 7.9e-126 454.1 289 78.5
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.9e-125 451.8 238 91.6
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 8.7e-125 450.7 283 75.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.4e-122 442.6 248 87.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.0e-121 439.5 254 83.9
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 7.7e-121 437.6 243 88.1
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 9.4e-119 430.6 288 76.4
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.5e-113 413.3 288 70.5
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.0e-112 410.6 394 57.9
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.1e-108 397.1 220 86.4
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.4e-106 390.2 276 72.8
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 6.3e-99 364.8 198 89.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 3.2e-95 352.4 190 85.3
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-94 348.6 273 66.7
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.2e-89 334.0 184 85.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 3.0e-85 319.3 288 60.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 3.4e-84 315.8 265 63.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.4e-84 315.8 279 61.3
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-76 288.9 172 79.1
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 6.4e-75 285.0 253 61.3
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-68 263.1 194 70.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 3.4e-68 262.7 261 49.4
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 4.9e-51 205.7 133 77.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 4.9e-51 205.7 133 77.4
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 6.6e-48 195.3 187 58.8
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 4.2e-34 149.4 141 58.2
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.7e-30 136.3 129 58.9
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 3.9e-24 116.3 72 72.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 6.7e-24 115.5 66 78.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.5e-23 114.4 78 74.4
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 4.3e-23 112.8 65 84.6
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 8.2e-22 108.6 83 67.5
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.2e-22 108.6 83 67.5
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.0e-16 90.1 51 78.4
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 6.3e-14 82.4 46 82.6
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 2.6e-12 77.0 45 77.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 8.5e-11 72.0 90 51.1
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 8.5e-11 72.0 90 51.1
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.3e-08 64.7 39 82.1
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 9.7e-07 58.5 41 73.2


User provided reference genes

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