Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 0.0e+00 1619.8 825 100.0
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 0.0e+00 1357.8 826 82.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 0.0e+00 1342.4 825 83.4
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1115.1 835 67.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1095.9 831 66.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 2.5e-310 1068.5 833 65.7
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.2e-306 1055.4 833 64.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.6e-301 1039.3 832 64.2
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 6.8e-300 1033.9 789 66.0
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.6e-299 1031.9 834 62.9
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.4e-299 1031.6 825 63.3
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.7e-298 1029.2 787 64.8
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 2.4e-297 1025.4 826 63.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 7.1e-297 1023.8 834 62.7
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.6e-296 1022.7 828 62.7
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.6e-296 1021.1 729 70.5
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 6.0e-296 1020.8 834 62.6
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 6.0e-296 1020.8 790 64.9
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 5.1e-295 1017.7 789 64.8
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 5.1e-295 1017.7 830 62.9
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 6.6e-295 1017.3 833 62.7
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.6e-294 1014.2 784 65.6
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.8e-293 1011.9 832 64.1
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 4.7e-293 1011.1 794 65.6
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 3.1e-292 1008.4 789 64.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 4.4e-291 1004.6 815 63.1
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 796 64.6
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.4e-289 999.6 790 64.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.9e-289 999.2 795 63.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.2e-289 998.0 835 61.1
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 5.4e-289 997.7 826 62.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 4.6e-288 994.6 793 63.3
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.6e-287 990.7 788 63.8
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 8.7e-287 990.3 790 63.4
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.3e-286 988.0 782 64.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.6e-285 986.1 832 61.9
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 1.6e-285 986.1 794 62.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.8e-285 985.3 831 60.9
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.6e-285 984.9 827 60.9
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-284 983.4 791 63.1
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.1e-284 983.4 831 59.6
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 7.6e-283 977.2 828 60.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.4e-281 972.2 792 60.7
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.4e-281 972.2 830 59.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.4e-281 971.1 791 62.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.7e-280 968.8 840 60.5
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 5.1e-279 964.5 787 62.4
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 8.7e-279 963.8 793 62.3
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.6e-278 960.3 839 59.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.1e-277 959.1 787 62.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 9.0e-276 953.7 784 61.2
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.0e-275 952.6 787 61.8
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 5.8e-275 951.0 827 59.5
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.7e-274 949.5 793 61.8
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.9e-274 948.7 794 62.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.1e-273 946.8 788 62.1
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.5e-272 941.8 753 62.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 6.7e-271 937.6 751 65.0
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.8e-268 929.5 791 60.1
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 9.0e-268 927.2 831 58.0
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.0e-267 926.0 796 59.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.6e-267 925.6 796 60.3
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.0e-266 923.7 832 59.3
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.7e-266 922.9 791 60.3
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.7e-266 922.9 852 57.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 6.5e-266 921.0 794 60.7
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.7e-264 915.6 847 58.3
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.0e-264 914.4 794 60.2
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.5e-259 898.3 833 55.0
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.7e-258 896.3 834 55.3
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.9e-258 895.6 835 57.2
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 5.0e-258 894.8 830 54.5
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.4e-257 893.3 804 57.3
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.4e-257 893.3 832 54.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 4.2e-257 891.7 833 55.0
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 4.2e-257 891.7 835 54.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.6e-256 889.8 791 56.4
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.0e-255 887.1 859 53.8
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.3e-254 882.1 831 54.3
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.7e-254 881.3 841 55.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 5.7e-254 881.3 918 51.9
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.1e-247 858.2 702 62.4
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 7.2e-241 837.8 795 53.6
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.4e-239 833.6 829 54.0
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.3e-237 827.0 832 52.0
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.1e-236 823.9 829 51.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.5e-233 811.6 591 70.2
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.2e-227 793.9 612 65.5
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-219 767.3 618 64.1
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-219 767.3 618 64.1
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 4.2e-217 758.8 760 53.2
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 6.3e-213 745.0 619 62.7
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-212 744.2 632 62.2
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.3e-201 706.1 719 52.2
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 5.6e-201 705.3 622 58.0
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.5e-193 680.6 775 49.0
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 2.5e-185 653.3 767 46.0
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 8.9e-183 644.8 804 44.0
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.8e-176 623.2 718 46.1
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 4.9e-165 585.9 418 69.1
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.5e-158 564.3 481 62.2
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.0e-158 563.9 547 54.7
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.0e-158 563.9 474 65.4
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.4e-151 540.4 397 71.8
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 8.4e-149 531.9 550 51.1
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 9.0e-143 511.9 472 54.7
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.1e-129 468.4 314 70.1
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.3e-129 466.8 317 70.3
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.7e-129 465.3 352 64.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.0e-126 457.6 775 37.4
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-126 457.6 394 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.2e-118 431.8 792 35.7
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 4.4e-113 413.3 777 35.1
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.1e-91 341.3 458 41.0
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.1e-87 328.9 276 63.4
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.9e-80 303.5 295 55.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 6.4e-80 303.1 183 78.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.7e-77 295.0 259 56.8
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.2e-73 282.3 376 46.3
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.2e-70 272.3 860 28.1
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.6e-69 266.5 324 45.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.4e-63 246.9 304 44.1
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.4e-58 231.5 218 51.8
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-57 228.4 144 75.0
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.2e-55 221.1 175 58.3
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 8.1e-51 206.5 176 63.6
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.4e-48 196.4 168 60.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.1e-46 191.8 168 59.5
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 6.9e-42 176.8 245 43.3
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.7e-40 172.2 233 48.9
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 9.3e-39 166.4 175 48.6
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.3e-39 166.4 215 41.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.3e-34 150.6 136 55.9
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.1e-20 106.3 167 38.9
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 4.3e-20 104.4 697 22.0
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-13 82.0 85 41.2
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.7e-11 74.7 40 85.0
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 6.3e-11 73.9 73 47.9
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.5e-09 69.3 325 24.9
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.7e-08 65.9 124 35.5


User provided reference genes

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