Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0072 Erigeron canadensis HOM05D003457 ORTHO05D009746 2.4e-247 858.6 496 100.0
Lsat_1_v5_gn_2_136541 Lactuca sativa HOM05D003457 ORTHO05D009746 2.0e-169 599.7 464 73.5
HanXRQChr07g0206571 Helianthus annuus HOM05D003457 ORTHO05D009746 6.8e-162 574.7 427 72.4
Nitab4.5_0000319g0080 Nicotiana tabacum HOM05D003457 ORTHO05D009746 6.0e-126 455.3 421 61.3
Peaxi162Scf00300g00834 Petunia axillaris HOM05D003457 ORTHO05D009746 7.9e-126 454.9 424 58.3
Nitab4.5_0005040g0020 Nicotiana tabacum HOM05D003457 ORTHO05D009746 3.9e-125 452.6 421 62.0
Oeu061029.1 Olea europaea HOM05D000015 ORTHO05D001173 5.6e-124 448.7 491 57.8
PGSC0003DMG400000587 Solanum tuberosum HOM05D003457 ORTHO05D009746 4.8e-123 445.7 421 62.5
Sopen03g022020 Solanum pennellii HOM05D003457 ORTHO05D009746 3.4e-121 439.5 421 61.8
Actinidia28281 Actinidia chinensis HOM05D003457 ORTHO05D009746 1.0e-120 438.0 427 55.3
SalBow2G2559 Salvia bowleyana HOM05D003457 ORTHO05D009746 2.2e-120 436.8 442 52.3
Solyc03g081300.4 Solanum lycopersicum HOM05D003457 ORTHO05D009746 2.9e-120 436.4 421 54.6
CAN.G303.16 Capsicum annuum HOM05D003457 ORTHO05D009746 1.1e-119 434.5 421 60.6
Lj1P1027T26 Lonicera japonica HOM05D003457 ORTHO05D009746 2.1e-118 430.3 421 62.0
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 4.6e-118 429.1 418 56.0
Migut.F00989 Erythranthe guttata HOM05D003457 ORTHO05D009746 1.8e-117 427.2 431 53.8
CSS0014628 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009746 1.1e-116 424.5 421 54.2
CSS0016304 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009746 1.1e-116 424.5 421 54.2
Cc02_g00830 Coffea canephora HOM05D003457 ORTHO05D009746 1.1e-116 424.5 419 54.2
MSTRG.30 Avicennia marina HOM05D003457 ORTHO05D009746 3.3e-116 422.9 426 60.1
DCAR_010575 Daucus carota HOM05D003457 ORTHO05D009746 3.4e-113 412.9 425 53.4
TAR375G1036 Trochodendron aralioides HOM05D003457 ORTHO05D009746 3.6e-110 402.9 421 52.3
Rhsim09G0209500 Rhododendron simsii HOM05D003457 ORTHO05D009746 5.7e-108 395.6 465 47.1
Aqoxy4G02698 Aquilegia oxysepala HOM05D003457 ORTHO05D009746 1.8e-106 390.6 417 57.8
Cpa.g.sc3.154 Carica papaya HOM05D003457 ORTHO05D009746 5.3e-106 389.0 418 50.5
TWI23G0525 Tripterygium wilfordii HOM05D003457 ORTHO05D009746 1.5e-105 387.5 421 48.9
GSVIVG01038641001 Vitis vinifera HOM05D000015 ORTHO05D001173 2.0e-105 387.1 422 47.9
vmacro10157 Vaccinium macrocarpon HOM05D003457 ORTHO05D009746 7.7e-105 385.2 397 51.6
Haze_00295 Corylus avellana HOM05D003457 ORTHO05D009746 3.8e-104 382.9 429 49.0
Thecc.03G208500 Theobroma cacao HOM05D003457 ORTHO05D009746 6.5e-104 382.1 421 48.9
Cfa016161 Carpinus fangiana HOM05D003457 ORTHO05D009746 8.5e-104 381.7 429 49.0
Manes.05G197700 Manihot esculenta HOM05D003457 ORTHO05D009746 2.7e-102 376.7 423 48.7
Potri.015G005200 Populus trichocarpa HOM05D003457 ORTHO05D009746 4.6e-102 375.9 424 48.6
Sabra15G0003700 Salix brachista HOM05D003457 ORTHO05D009746 6.1e-102 375.6 424 49.1
Eucgr.K00438 Eucalyptus grandis HOM05D003457 ORTHO05D009746 7.9e-102 375.2 482 49.6
CiPaw.06G041300 Carya illinoinensis HOM05D003457 ORTHO05D009746 6.7e-101 372.1 419 47.7
Sc13g0010270 Simmondsia chinensis HOM05D003457 ORTHO05D009746 4.4e-100 369.4 419 45.8
Gohir.D04G000055 Gossypium hirsutum HOM05D003457 ORTHO05D009746 1.8e-98 364.0 421 53.9
Gorai.012G000800 Gossypium raimondii HOM05D003457 ORTHO05D009746 3.1e-98 363.2 421 53.9
Ah.07g204680 Amaranthus hybridus HOM05D003457 ORTHO05D009746 9.1e-98 361.7 424 45.5
Ciclev10023265m.g Citrus clementina HOM05D003457 ORTHO05D009746 2.0e-97 360.5 408 48.0
Duzib205G0560 Durio zibethinus HOM05D003457 ORTHO05D009746 4.5e-97 359.4 421 53.7
RcHm_v2.0_Chr1g0382851 Rosa chinensis HOM05D003457 ORTHO05D009746 4.5e-97 359.4 457 49.9
PGR142G0010 Punica granatum HOM05D003457 ORTHO05D009746 1.3e-96 357.8 492 48.8
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 2.2e-96 357.1 402 46.8
QL09p007206 Quercus lobata HOM05D003457 ORTHO05D009746 2.2e-96 357.1 423 46.8
SGA_v2.0_scaffold141G35560 Striga asiatica HOM05D003457 ORTHO05D009746 2.2e-96 357.1 483 50.1
EL10Ac3g05181 Beta vulgaris HOM05D003457 ORTHO05D009746 2.9e-96 356.7 401 46.4
AUR62035620 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.4e-95 354.4 401 46.1
FvH4_7g32910 Fragaria vesca HOM05D003457 ORTHO05D009746 7.2e-95 352.1 417 50.6
Atru.chr12.2427 Acer truncatum HOM05D003457 ORTHO05D009746 4.7e-94 349.4 418 45.9
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.7e-94 349.4 417 49.9
COL.COLO4_14369 Corchorus olitorius HOM05D000015 ORTHO05D001173 1.1e-92 344.7 408 47.1
Eucgr.K00434 Eucalyptus grandis HOM05D003457 ORTHO05D009746 1.1e-92 344.7 482 44.8
Glyma.04G228500 Glycine max HOM05D003457 ORTHO05D009746 7.4e-92 342.0 423 44.2
Carub.0008s1449 Capsella rubella HOM05D003457 ORTHO05D009746 9.7e-92 341.7 444 45.3
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.7e-91 340.9 417 48.4
Sp6g16240 Schrenkiella parvula HOM05D003457 ORTHO05D009746 3.7e-91 339.7 419 46.1
Lalb_Chr08g0239621 Lupinus albus HOM05D003457 ORTHO05D009746 1.4e-90 337.8 420 47.4
Aa31LG3G9830 Aethionema arabicum HOM05D003457 ORTHO05D009746 5.3e-90 335.9 419 45.6
AT5G54180 Arabidopsis thaliana HOM05D003457 ORTHO05D009746 5.3e-90 335.9 445 44.9
A10p11500 Brassica napus HOM05D003457 ORTHO05D009746 9.1e-90 335.1 416 45.2
BraA10t43244Z Brassica rapa HOM05D003457 ORTHO05D009746 1.6e-89 334.3 416 45.0
AL8G29400 Arabidopsis lyrata HOM05D003457 ORTHO05D009746 2.0e-89 334.0 445 44.0
CARHR267390 Cardamine hirsuta HOM05D003457 ORTHO05D009746 2.0e-89 334.0 416 45.9
Prupe.2G318700 Prunus persica HOM05D003457 ORTHO05D009746 2.0e-89 334.0 418 50.5
BolC9t57320H Brassica oleracea HOM05D003457 ORTHO05D009746 3.5e-89 333.2 416 45.0
Medtr3g092710 Medicago truncatula HOM05D003457 ORTHO05D009746 4.5e-89 332.8 486 40.3
C09p44480 Brassica napus HOM05D003457 ORTHO05D009746 2.2e-88 330.5 416 45.0
Gohir.D04G000085 Gossypium hirsutum HOM05D003457 ORTHO05D009746 6.5e-88 328.9 397 52.6
Phvul.009G045200 Phaseolus vulgaris HOM05D003457 ORTHO05D009746 2.5e-87 327.0 420 43.1
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.0e-85 321.6 387 50.4
VMungo1309G1701 Vigna mungo HOM05D003457 ORTHO05D009746 1.0e-85 321.6 419 43.0
Thhalv10013278m.g Eutrema salsugineum HOM05D003457 ORTHO05D009746 1.5e-84 317.8 391 46.5
MBI04_g27236_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009746 1.7e-83 314.3 422 51.4
Ca_16778_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009746 1.1e-82 311.6 355 46.2
TPR.G33660 Trifolium pratense HOM05D003457 ORTHO05D009746 4.1e-82 309.7 420 46.7
Lj1g0013970 Lotus japonicus HOM05D003457 ORTHO05D009746 5.3e-82 309.3 420 46.2
Hund21057 Selenicereus undatus HOM05D003457 ORTHO05D009746 7.0e-82 308.9 424 44.8
Eucgr.K00030 Eucalyptus grandis HOM05D003457 ORTHO05D009746 1.2e-81 308.1 422 42.4
THA.LOC104799988 Tarenaya hassleriana HOM05D003457 ORTHO05D009746 1.3e-80 304.7 396 45.2
THA.LOC104811888 Tarenaya hassleriana HOM05D003457 ORTHO05D009746 5.5e-79 299.3 418 42.3
ATR1155G022 Amborella trichopoda HOM05D003457 ORTHO05D009746 1.5e-63 248.1 426 36.9
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.3e-55 219.2 342 38.9
Eucgr.K00356 Eucalyptus grandis HOM05D003457 ORTHO05D009746 1.2e-33 148.7 132 51.5
FAN03G0889 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.8e-33 146.0 129 51.2
unitig_578.g16678 Utricularia gibba HOM05D003457 ORTHO05D009746 2.3e-32 144.4 117 58.1
ATR0598G078 Amborella trichopoda HOM05D003457 ORTHO05D009746 3.9e-32 143.7 418 35.4
unitig_578.g16677 Utricularia gibba HOM05D003457 ORTHO05D009746 5.6e-31 139.8 187 40.6
CDE11G0872 Ceratophyllum demersum HOM05D000283 ORTHO05D000358 8.4e-27 125.9 99 56.6
Nn1g00446 Nelumbo nucifera HOM05D003457 ORTHO05D009746 1.4e-26 125.2 89 64.0
TAR628G0006 Trochodendron aralioides HOM05D002811 ORTHO05D003053 1.0e-16 92.4 64 64.1
CDE04G1753 Ceratophyllum demersum HOM05D003457 ORTHO05D009746 6.2e-14 83.2 226 41.6
Nn7g37044 Nelumbo nucifera HOM05D000161 ORTHO05D000111 3.5e-09 67.4 268 22.8
Sabra12G0012400 Salix brachista HOM05D000126 ORTHO05D003017 6.0e-09 66.6 46 60.9
SMO200G0110 Selaginella moellendorffii HOM05D048949 ORTHO05D009746 5.1e-08 63.5 259 20.5
Hma1.2p1_0812F.1_g222440 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.1e-07 62.4 121 31.4
Hma1.2p1_0906F.1_g235420 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.1e-07 62.4 121 31.4
HanXRQChr01g0009651 Helianthus annuus HOM05D001504 ORTHO05D001394 1.5e-07 62.0 130 28.5
Manes.16G051100 Manihot esculenta HOM05D001504 ORTHO05D001394 1.5e-07 62.0 131 31.3
Dinv24087 Davidia involucrata HOM05D001504 ORTHO05D001394 2.5e-07 61.2 100 34.0
Rhsim04G0097500 Rhododendron simsii HOM05D001504 ORTHO05D001394 2.5e-07 61.2 138 30.4
RhsimUnG0213200 Rhododendron simsii HOM05D001504 ORTHO05D001394 2.5e-07 61.2 138 30.4
vmacro09111 Vaccinium macrocarpon HOM05D001504 ORTHO05D001394 3.3e-07 60.8 132 30.3
AUR62006412 Chenopodium quinoa HOM05D000161 ORTHO05D000111 4.3e-07 60.5 336 20.5
Nn2g15619 Nelumbo nucifera HOM05D001504 ORTHO05D001394 5.6e-07 60.1 121 28.1
Cpa.g.sc135.43 Carica papaya HOM05D001504 ORTHO05D001394 7.4e-07 59.7 131 30.5
Sed0010721 Sechium edule HOM05D001504 ORTHO05D001394 7.4e-07 59.7 131 31.3
TPR.G13261 Trifolium pratense HOM05D001504 ORTHO05D001394 7.4e-07 59.7 90 34.4
Actinidia38576 Actinidia chinensis HOM05D001504 ORTHO05D001394 9.6e-07 59.3 138 29.0
Oeu033743.1 Olea europaea HOM05D001504 ORTHO05D001394 9.6e-07 59.3 131 26.0
MBI15_g24377_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 1.3e-06 58.9 314 19.7
TWI38G1051 Tripterygium wilfordii HOM05D001504 ORTHO05D001394 1.3e-06 58.9 131 31.3
MBI04_g32791_MAGBIO Magnolia biondii HOM05D001504 ORTHO05D001394 2.1e-06 58.2 121 28.9
Nn3g20682 Nelumbo nucifera HOM05D000161 ORTHO05D000111 2.1e-06 58.2 363 19.8
DCAR_017024 Daucus carota HOM05D001504 ORTHO05D001394 2.8e-06 57.8 112 28.6
MELO3C021796.2 Cucumis melo HOM05D001504 ORTHO05D001394 3.7e-06 57.4 131 29.0
Duzib235G0022 Durio zibethinus HOM05D001504 ORTHO05D001394 3.7e-06 57.4 131 29.8
ECA248G0529 Erigeron canadensis HOM05D001504 ORTHO05D001394 4.8e-06 57.0 121 28.1
MSTRG.6470 Avicennia marina HOM05D001504 ORTHO05D001394 6.2e-06 56.6 131 29.0
Dinv14280 Davidia involucrata HOM05D001504 ORTHO05D001394 6.2e-06 56.6 116 29.3
Lju124C29T7 Lonicera japonica HOM05D001504 ORTHO05D001394 6.2e-06 56.6 90 30.0
Medtr7g093000 Medicago truncatula HOM05D001504 ORTHO05D001394 6.2e-06 56.6 90 34.4
SGA_v2.0_scaffold341G49380 Striga asiatica HOM05D001504 ORTHO05D001394 6.2e-06 56.6 131 29.0
TAR636G0906 Trochodendron aralioides HOM05D001504 ORTHO05D001394 6.2e-06 56.6 116 28.4
BcaC06g31880 Brassica carinata HOM05D000161 ORTHO05D000111 8.2e-06 56.2 323 18.3
Glyma.03G114500 Glycine max HOM05D001504 ORTHO05D001394 8.2e-06 56.2 94 29.8


User provided reference genes

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