Gene: AT5G54180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54180
  • Transcript Identifier AT5G54180.1
  • Gene Type Coding gene
  • Location Chr5 : 21988544-21990183 : positive

Gene Family Information

  • ID HOM05D003457
  • #Genes/#Species 197/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54180.1
  • symbol PTAC15
  • uniprot Q9FK23

Descriptions

  • Description plastid transcriptionally active 15
  • Computational description plastid transcriptionally active 15 (PTAC15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT4G14605.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009658
IBA
Gene Ontologychloroplast organization1
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006353
IEA
GOA DatabaseDNA-templated transcription, termination
GO:0032502
IBA
Gene Ontologydevelopmental process1
GO:0015979
IDA
Gene Ontologyphotosynthesis2
GO:0006393
IDA
Gene Ontologytermination of mitochondrial transcription2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003690
IEA
Gene Ontologydouble-stranded DNA binding
GO:0003690
IEA
InterProdouble-stranded DNA binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009508
IDA
GOA Databaseplastid chromosome
GO:0042644
IDA
GOA Databasechloroplast nucleoid
GO:0042644
HDA
Gene Ontologychloroplast nucleoid4
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
IBA
Gene Ontologychloroplast1 5 6
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003690 Transcription termination factor, mitochondrial/chloroplastic
IPR038538 MTERF superfamily, mitochondrial/chloroplastic
Mapman id Description
15.6.1.2.3.5 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC15
15.6.2.2 RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF)