Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 0.0e+00 2502.6 1495 100.0
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 0.0e+00 1202.6 1234 56.8
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 0.0e+00 1132.9 1515 49.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 2.4e-287 993.0 1069 52.8
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 1.6e-283 980.3 1065 52.5
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-278 963.8 1075 52.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 9.5e-276 954.5 1074 51.3
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 4.6e-270 935.6 1116 49.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 9.6e-268 927.9 1076 49.3
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.7e-262 909.8 1070 49.1
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.0e-261 907.9 1108 47.7
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 2.8e-259 899.8 1063 49.2
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 1.3e-256 891.0 1069 48.2
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.9e-255 887.1 1066 49.9
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.6e-254 884.0 1052 49.0
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.0e-253 881.3 1070 48.4
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.3e-252 876.3 998 49.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 8.1e-251 871.7 1001 49.6
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 5.3e-250 869.0 1124 46.7
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 5.3e-250 869.0 1095 48.0
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 9.9e-249 864.8 1043 48.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.7e-248 864.0 1086 47.4
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 2.9e-248 863.2 1059 48.3
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.9e-245 852.8 1109 45.9
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.1e-244 851.3 897 52.2
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 1.9e-244 850.5 1086 47.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 3.7e-243 846.3 1077 47.0
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.1e-242 844.7 1059 46.9
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.4e-242 844.3 1051 47.7
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.8e-242 844.0 1113 45.5
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 2.4e-242 843.6 902 51.7
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.1e-242 843.2 1096 46.5
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 9.0e-242 841.6 1076 45.3
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 7.1e-239 832.0 1065 46.4
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.3e-237 827.8 1159 44.3
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 2.3e-237 827.0 1085 46.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 6.7e-237 825.5 1066 47.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 5.7e-236 822.4 1019 46.3
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 7.4e-236 822.0 1097 44.8
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 3.7e-235 819.7 1075 46.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.3e-235 818.9 1016 46.6
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 6.3e-235 818.9 1053 46.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 3.1e-234 816.6 1173 43.6
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 6.9e-234 815.5 1059 46.1
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 3.4e-233 813.1 1083 44.0
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.3e-232 811.2 875 51.2
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.0e-229 801.6 1093 44.6
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.2e-227 793.9 911 49.2
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 3.1e-226 790.0 1044 45.7
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 6.9e-226 788.9 1074 45.5
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 6.9e-226 788.9 1065 44.7
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 5.0e-224 782.7 1074 45.6
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.5e-224 782.3 1068 44.9
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.2e-223 778.9 1084 43.7
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 7.2e-223 778.9 1071 44.6
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.6e-222 777.7 917 47.8
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 6.1e-222 775.8 1006 45.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.0e-221 775.0 907 48.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.1e-220 771.5 1108 42.7
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 3.3e-220 770.0 1020 45.8
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.2e-219 765.4 1043 43.1
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.1e-218 765.0 921 47.2
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 2.6e-217 760.4 1068 43.6
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.4e-217 760.0 1108 43.1
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.2e-216 757.3 1208 41.6
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 2.9e-216 756.9 1066 43.7
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.0e-213 748.4 1023 44.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.1e-212 745.0 1088 42.2
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.6e-212 743.8 1143 41.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 4.8e-211 739.6 1117 41.4
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 8.2e-211 738.8 1209 41.0
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 3.1e-210 736.9 1090 42.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 7.7e-209 732.3 1068 41.9
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.9e-208 730.3 1087 42.0
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.1e-206 724.2 1123 41.1
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 2.7e-206 723.8 1138 41.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.2e-205 719.5 876 47.1
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 6.7e-205 719.2 634 58.4
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.8e-202 711.1 1157 40.2
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-201 708.4 1063 42.2
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.3e-200 704.9 1105 40.5
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 5.0e-200 703.0 1002 42.8
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 7.2e-199 699.1 1090 41.6
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.6e-198 696.8 1082 41.0
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.2e-195 687.6 1051 42.3
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 8.3e-195 685.6 1083 41.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.4e-194 684.1 1074 40.6
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.2e-193 681.8 1067 40.8
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-193 681.0 1089 40.8
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.7e-193 679.1 1101 41.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.7e-193 679.1 1101 41.5
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 7.2e-191 672.5 994 42.1
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.6e-190 671.4 1090 40.3
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 2.3e-189 667.5 633 55.5
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 7.0e-186 656.0 1098 39.1
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 9.2e-186 655.6 658 52.1
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 8.6e-184 649.0 1072 39.0
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.8e-181 641.3 1011 40.9
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.4e-180 636.7 738 47.6
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 9.8e-172 609.0 636 50.9
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.8e-166 590.9 1000 39.1
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 6.2e-166 589.7 874 42.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 4.6e-161 573.5 861 41.8
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 4.7e-158 563.5 795 43.6
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.6e-153 548.5 628 49.8
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 4.6e-153 547.0 741 44.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.6e-151 540.0 958 36.6
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-143 515.8 508 55.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.3e-142 512.3 740 44.1
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.8e-133 481.9 432 58.3
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.4e-123 446.4 772 37.7
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.4e-122 445.7 680 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.9e-109 400.2 608 38.8
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 4.5e-100 370.9 633 36.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.7e-91 342.4 343 53.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-89 335.1 745 34.6
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.2e-86 325.5 752 33.2
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 3.5e-84 318.2 315 54.6
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.1e-82 313.2 307 57.3
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.7e-81 308.5 1069 29.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.9e-78 297.7 283 54.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.9e-75 288.5 269 56.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.0e-67 263.5 978 28.0
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.3e-67 263.1 978 28.0
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.9e-62 245.4 372 38.2
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.2e-54 219.2 354 37.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.9e-35 155.2 392 34.2
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-29 136.3 540 27.6
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.0e-27 130.6 499 26.9
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 5.6e-26 124.8 257 35.4
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.8e-25 122.5 346 30.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 8.4e-22 110.9 293 29.4
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 8.2e-09 67.8 201 35.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.1e-08 67.4 77 49.4
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 7.6e-07 61.2 133 35.3
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 8.4e-06 57.8 36 75.0


User provided reference genes

Program Settings