Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 2442.5 1317 100.0
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1867.0 1317 75.6
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1820.1 1317 75.4
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1654.8 1317 66.1
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1639.8 1317 65.9
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1634.8 1303 66.3
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1611.3 1317 64.7
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1601.6 1317 65.0
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1597.0 1317 64.8
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1588.2 1317 63.6
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1584.3 1321 64.6
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1568.5 1317 63.1
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1565.8 1317 63.9
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1558.1 1317 63.5
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1555.4 1317 62.6
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1554.7 1317 62.8
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1553.9 1317 62.8
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1553.1 1317 63.2
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1549.3 1318 63.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1542.3 1317 62.1
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1537.3 1317 62.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1534.6 1317 62.2
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1533.5 1317 62.3
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1529.6 1317 62.0
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1529.2 1317 64.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1523.8 1317 62.0
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1522.7 1317 61.7
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1518.4 1317 63.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1518.1 1317 60.6
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1514.2 1317 61.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1512.7 1317 61.4
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1508.0 1317 61.4
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1506.5 1365 60.4
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1505.3 1317 61.5
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1505.3 1317 61.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1503.0 1317 61.6
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1503.0 1317 63.2
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1502.3 1317 61.8
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1500.3 1317 62.0
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1498.4 1317 60.7
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1493.0 1549 55.1
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1491.5 1317 60.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1484.9 1317 60.9
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1481.8 1325 60.7
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1481.1 1343 60.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1479.9 1340 60.4
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1477.6 1332 60.7
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1477.2 1332 60.7
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1472.2 1359 59.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1471.8 1317 60.3
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1464.1 1304 62.7
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1463.0 1436 57.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1462.2 1317 60.1
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1460.3 1317 61.9
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1454.5 1317 60.1
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1442.2 1370 58.2
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1437.9 1317 59.6
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1426.0 1261 61.4
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1423.7 1317 59.1
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1419.8 1317 60.2
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1416.0 1318 58.8
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1416.0 1318 60.2
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1415.6 1318 60.2
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1415.2 1210 62.6
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1414.1 1303 58.7
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1412.5 1318 60.2
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1389.0 1303 58.1
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1387.5 1210 61.6
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1383.2 1317 57.7
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1374.4 1337 57.0
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1349.7 1401 55.2
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1330.1 1318 56.4
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1322.0 1370 55.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1320.4 1254 57.8
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1305.0 1303 55.4
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1163.7 1317 48.7
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 1.1e-310 1070.5 1318 46.7
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.4e-310 1070.1 1319 47.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 7.1e-283 978.0 1316 45.8
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 4.6e-282 975.3 1062 51.3
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.5e-259 899.8 902 55.0
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.2e-255 886.7 1265 44.0
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.9e-251 873.6 743 62.0
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.9e-251 873.6 1025 49.9
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.5e-251 873.2 1059 48.7
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-244 851.3 767 60.1
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.4e-243 847.4 759 60.5
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.5e-240 837.4 888 52.4
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 2.6e-232 810.1 762 57.7
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.0e-228 795.8 1103 43.9
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.2e-226 791.2 669 63.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 2.6e-216 756.9 787 55.3
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 7.5e-216 755.4 629 63.0
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-215 754.6 629 63.0
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.3e-211 740.0 733 55.4
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.2e-210 738.0 1263 37.7
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 1.2e-208 731.5 724 55.4
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-192 678.3 631 58.0
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-185 654.4 594 59.3
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-185 654.4 594 59.3
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 9.9e-184 648.7 558 61.5
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 4.9e-175 619.8 735 50.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 6.4e-175 619.4 595 59.8
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 2.1e-165 587.8 1373 32.6
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.3e-138 498.8 375 68.5
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.2e-136 492.3 1386 32.4
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.5e-136 490.3 1333 31.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.2e-135 488.0 345 73.3
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.3e-127 462.2 294 79.9
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.0e-124 452.6 433 58.7
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.8e-122 444.5 524 48.9
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.7e-122 444.1 454 55.5
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 8.5e-119 433.0 459 55.6
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.6e-117 428.7 1377 27.6
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.7e-112 411.4 264 79.5
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.5e-112 410.6 222 92.8
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.0e-111 407.1 244 84.0
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 4.5e-104 384.0 224 85.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 5.6e-94 350.5 391 50.6
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 8.0e-93 346.7 187 92.5
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.9e-88 330.5 223 78.5
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.0e-87 329.7 853 31.8
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-75 289.7 317 50.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-71 276.2 408 39.5
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.6e-69 268.1 235 60.9
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 8.1e-61 240.4 126 92.1
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.0e-52 211.5 140 80.0
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.1e-49 200.7 139 78.4
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 9.9e-43 180.3 170 58.2
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-36 159.5 87 93.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 9.0e-36 157.1 257 43.2
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.2e-34 152.5 106 77.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 4.9e-34 151.4 168 49.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 5.1e-31 141.4 72 90.3
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 7.6e-27 127.5 114 60.5
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.9e-22 112.8 64 87.5
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 2.5e-22 112.5 64 84.4
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 7.4e-22 110.9 106 60.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.2e-21 109.4 100 62.0
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-16 93.2 137 38.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 8.8e-15 87.4 141 36.9
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 9.7e-14 84.0 53 77.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 2.2e-13 82.8 167 35.3
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 8.2e-13 80.9 90 52.2
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 2.0e-11 76.3 72 52.8
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 3.4e-11 75.5 90 46.7
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.7e-10 73.2 63 66.7
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 61 67.2
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 5.5e-09 68.2 56 71.4
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 3.9e-07 62.0 33 93.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 4.4e-06 58.5 76 42.1
ECA233G5354 Erigeron canadensis HOM05D005045 ORTHO05D187720 5.7e-06 58.2 57 64.9


User provided reference genes

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