Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.7e-48 195.7 96 100.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 5.5e-44 180.6 94 92.6
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 9.5e-44 179.9 96 88.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 9.5e-44 179.9 96 88.5
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.1e-43 178.7 94 89.4
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 8.0e-43 176.8 96 86.5
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.8e-42 175.6 94 89.4
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.3e-42 175.3 95 85.3
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.0e-42 174.9 96 86.5
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.0e-42 174.9 94 88.3
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.0e-42 174.9 94 88.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 3.0e-42 174.9 94 88.3
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 87.2
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 87.2
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 88.3
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 6.8e-42 173.7 94 88.3
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 6.8e-42 173.7 91 91.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 8.9e-42 173.3 97 87.6
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 8.9e-42 173.3 94 87.2
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 8.9e-42 173.3 96 85.4
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.2e-41 172.9 96 85.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.2e-41 172.9 94 87.2
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.2e-41 172.9 94 87.2
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.5e-41 172.6 94 86.2
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.5e-41 172.6 92 89.1
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.5e-41 172.6 94 85.1
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.5e-41 172.6 94 86.2
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.0e-41 172.2 94 87.2
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.0e-41 172.2 94 87.2
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.6e-41 171.8 94 87.2
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 2.6e-41 171.8 94 86.2
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 3.4e-41 171.4 87 93.1
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.4e-41 171.4 94 87.2
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 87.2
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 85.1
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 86.2
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 4.4e-41 171.0 96 85.4
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.7e-41 170.6 95 85.3
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.8e-41 169.9 94 87.2
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.3e-40 169.5 86 94.2
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.7e-40 169.1 94 84.0
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 3.7e-40 167.9 94 84.0
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 3.7e-40 167.9 94 84.0
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 3.7e-40 167.9 94 85.1
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 3.7e-40 167.9 87 92.0
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 3.7e-40 167.9 87 92.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 8.3e-40 166.8 96 85.4
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.4e-39 166.0 87 90.8
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.4e-39 166.0 96 82.3
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 2.4e-39 165.2 96 82.3
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 7.0e-39 163.7 96 81.2
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 7.0e-39 163.7 86 90.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 7.0e-39 163.7 86 90.7
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 9.2e-39 163.3 94 81.9
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.2e-38 162.9 94 80.9
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.6e-38 162.5 94 81.9
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.6e-38 162.5 84 91.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 4.5e-38 161.0 96 79.2
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 4.5e-38 161.0 94 79.8
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.9e-38 160.6 93 81.7
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 5.9e-38 160.6 94 80.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.9e-38 160.6 83 90.4
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 5.9e-38 160.6 94 81.9
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.8e-38 160.2 123 67.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.0e-37 159.8 94 77.7
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.0e-37 159.8 94 79.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.0e-37 159.8 86 87.2
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.3e-37 158.7 94 80.9
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.9e-37 158.3 94 78.7
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.9e-37 158.3 104 76.0
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 3.9e-37 157.9 96 77.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 3.9e-37 157.9 95 76.8
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 5.0e-37 157.5 94 78.7
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 5.0e-37 157.5 94 78.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 5.0e-37 157.5 96 78.1
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.1e-36 156.4 93 80.6
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.9e-36 155.6 96 79.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.9e-36 155.6 96 79.2
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.9e-36 155.6 93 83.9
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 4.3e-36 154.5 96 77.1
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 4.3e-36 154.5 96 77.1
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.2e-35 152.9 96 76.0
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.6e-35 152.5 95 74.7
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 77.7
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 3.6e-35 151.4 84 85.7
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 3.6e-35 151.4 84 85.7
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 3.6e-35 151.4 84 85.7
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 6.1e-35 150.6 92 73.9
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 2.3e-34 148.7 85 83.5
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.1e-34 148.3 102 72.5
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 3.1e-34 148.3 92 77.2
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.0e-34 147.9 94 73.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 5.2e-34 147.5 96 71.9
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 8.9e-34 146.7 84 83.3
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 8.9e-34 146.7 88 78.4
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 4.4e-33 144.4 96 72.9
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.9e-31 139.0 86 72.1
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 2.0e-30 135.6 75 85.3
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.3e-29 132.1 78 84.6
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.6e-29 130.6 100 68.0
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 8.6e-29 130.2 81 75.3
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.1e-28 129.8 77 84.4
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 5.6e-28 127.5 64 90.6
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.2e-27 126.3 77 80.5
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.2e-27 126.3 74 81.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 4.7e-27 124.4 74 79.7
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 6.2e-27 124.0 66 90.9
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.1e-26 123.2 83 73.5
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.4e-26 122.9 74 75.7
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.6e-25 118.6 73 75.3
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 9.8e-25 116.7 71 76.1
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.9e-24 115.2 74 73.0
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.4e-23 112.8 66 81.8
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.4e-23 112.1 87 66.7
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.4e-23 112.1 87 66.7
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 2.4e-23 112.1 74 71.6
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 3.2e-23 111.7 67 73.1
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 9.2e-23 110.2 94 60.6
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.5e-20 102.8 85 52.9
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 7.3e-20 100.5 86 53.5
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 3.6e-19 98.2 90 57.8
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 6.2e-19 97.4 75 69.3
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.0e-18 94.7 53 86.8
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 1.1e-15 86.7 45 84.4
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.5e-14 81.6 55 65.5
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 6.0e-14 80.9 85 48.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 8.6e-13 77.0 40 85.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.1e-10 70.1 78 51.3
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.9e-08 62.0 39 74.4
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.0e-06 54.3 33 75.8


User provided reference genes

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