Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 0.0e+00 1792.3 947 100.0
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 0.0e+00 1245.3 1028 69.1
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.3e-299 1033.1 1108 59.4
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.6e-284 981.5 1059 55.9
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 3.0e-283 978.8 1059 56.7
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 8.4e-278 960.7 1099 53.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 1.1e-274 950.3 978 57.5
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 4.1e-272 941.8 1043 54.0
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.2e-269 931.8 1029 54.4
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 6.1e-268 927.9 1040 53.2
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 3.7e-265 918.7 1042 53.2
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 4.2e-261 905.2 1026 52.6
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 2.1e-260 902.9 994 54.5
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 3.0e-259 899.0 1043 52.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 2.0e-258 896.3 1028 52.3
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 3.3e-258 895.6 1061 51.7
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 7.4e-258 894.4 1044 52.4
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 3.7e-257 892.1 1081 50.9
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.4e-256 890.2 1031 52.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.4e-256 890.2 1051 53.3
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.4e-256 889.4 1031 52.1
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 9.1e-256 887.5 1047 52.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 3.4e-255 885.6 1025 52.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.4e-255 885.6 1057 53.0
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.9e-255 884.8 1084 50.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 5.9e-255 884.8 1028 52.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 5.9e-255 884.8 1109 49.6
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 7.7e-255 884.4 1077 50.5
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 1.3e-254 883.6 1058 51.7
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.2e-254 882.9 1058 51.7
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 5.0e-254 881.7 1130 50.9
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.5e-254 880.9 1031 51.5
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 5.5e-253 878.2 1034 51.1
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.1e-252 876.3 1074 52.0
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.4e-251 873.6 1015 53.9
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.0e-250 869.8 1069 52.0
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 4.4e-250 868.6 1039 52.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 5.7e-250 868.2 1077 50.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 8.2e-249 864.4 1014 53.6
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.4e-248 863.6 1039 50.7
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 3.1e-248 862.4 1107 49.4
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.6e-247 859.4 1085 51.2
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 4.5e-247 858.6 1017 53.1
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.7e-246 856.7 1017 51.0
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.8e-246 855.5 779 61.5
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 5.0e-246 855.1 986 53.4
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.5e-245 853.6 1045 50.7
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.9e-245 853.2 1045 50.7
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.5e-245 852.8 1023 51.4
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 4.2e-245 852.0 915 57.5
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.6e-244 850.1 1034 50.2
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 2.7e-244 849.4 1095 50.0
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.7e-244 849.4 941 54.2
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 4.7e-244 848.6 1023 51.0
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 5.2e-243 845.1 1075 49.2
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.7e-241 839.0 1036 50.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 8.2e-241 837.8 1034 52.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.1e-240 835.5 1056 50.2
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 9.1e-240 834.3 1044 50.8
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.6e-239 833.6 1034 51.6
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 2.9e-238 829.3 1049 49.6
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.9e-238 829.3 823 57.5
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.5e-237 827.0 999 51.5
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.0e-235 819.3 1013 50.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.2e-234 817.4 1055 48.9
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 5.7e-234 815.1 1019 52.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 8.3e-233 811.2 946 52.2
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.7e-231 806.2 1108 47.5
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 7.7e-231 804.7 996 50.5
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 7.7e-231 804.7 834 56.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 3.3e-229 799.3 1022 48.3
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 7.2e-229 798.1 1061 48.4
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 9.5e-229 797.7 1026 50.2
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.2e-228 797.3 1044 49.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.8e-228 796.2 1038 49.8
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.8e-227 793.5 1166 45.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.8e-227 793.5 1049 47.8
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 8.9e-227 791.2 949 51.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.6e-223 780.4 773 56.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 5.2e-219 765.4 1046 46.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 5.2e-219 765.4 1046 46.7
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.5e-218 763.8 907 50.8
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.9e-217 759.6 1037 47.1
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 6.4e-217 758.4 1168 44.9
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 4.1e-216 755.7 1048 46.4
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 9.2e-216 754.6 1023 47.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.8e-212 743.0 601 66.2
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 4.7e-212 742.3 1011 48.4
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.1e-211 741.1 1026 46.8
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.8e-211 740.3 1075 45.8
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 2.4e-208 729.9 634 63.6
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 4.1e-208 729.2 716 58.7
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.5e-207 726.1 981 47.9
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 5.4e-200 702.2 1051 45.4
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.3e-198 696.8 1035 44.7
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 2.3e-198 696.8 1015 45.0
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.3e-198 696.8 1035 44.7
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.3e-198 696.8 1015 45.1
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 3.3e-197 693.0 800 52.2
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 3.3e-197 693.0 800 52.2
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 4.4e-194 682.6 1032 44.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 5.8e-194 682.2 790 51.9
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.9e-192 677.2 815 51.2
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 9.2e-192 674.9 692 55.9
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.6e-191 674.1 1017 44.4
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 3.5e-191 672.9 889 49.8
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.0e-190 671.4 923 47.2
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 3.3e-189 666.4 1020 44.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 4.3e-189 666.0 1019 44.4
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 4.6e-183 646.0 525 66.3
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.4e-176 624.4 802 48.4
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.8e-171 607.4 810 47.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 4.5e-170 602.8 802 47.8
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.4e-169 599.0 793 49.4
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 8.4e-169 598.6 810 46.0
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.5e-165 587.8 434 70.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.5e-165 587.0 923 43.3
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.0e-154 550.8 854 42.9
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 7.7e-154 548.9 945 41.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.2e-148 530.8 367 74.4
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.1e-147 526.6 370 74.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.4e-139 500.7 891 41.9
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 9.4e-136 488.8 983 38.5
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 9.7e-125 452.2 353 69.4
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.5e-122 443.7 725 42.1
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 3.5e-122 443.7 772 42.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.9e-120 438.0 354 64.4
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.5e-96 357.8 336 62.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-95 355.5 473 48.2
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.7e-84 318.5 375 52.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 6.0e-82 310.1 495 44.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.9e-72 278.5 251 58.2
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 2.8e-71 274.6 534 39.7
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 4.0e-70 270.8 382 44.8
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 4.2e-59 234.2 540 37.8
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 4.2e-59 234.2 540 37.8
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.8e-57 228.8 297 44.4
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.2e-51 208.0 156 63.5
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-48 199.5 154 67.5
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 9.0e-46 189.9 616 30.0
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.7e-44 185.7 129 69.8
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.9e-43 182.2 407 38.6
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.5e-43 181.8 113 79.6
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.2e-43 181.0 152 57.9
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.5e-40 172.6 185 54.1
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 1.1e-38 166.4 136 67.6
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 7.7e-37 160.2 166 53.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.1e-35 156.4 291 35.7
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 9.7e-32 143.3 134 57.5
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.0e-28 133.3 104 65.4
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 8.8e-25 120.2 78 78.2
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 7.4e-24 117.1 91 71.4
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 7.4e-24 117.1 299 35.5
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 4.8e-23 114.4 91 70.3
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 1.1e-19 103.2 74 68.9
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.6e-18 99.4 247 34.8
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.1e-16 93.2 301 31.6
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 7.0e-14 84.0 50 80.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 9.1e-14 83.6 158 35.4
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.0e-13 82.4 79 49.4
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 5.9e-13 80.9 50 76.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.6e-10 72.8 51 68.6
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 2.1e-10 72.4 102 43.1
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.7e-10 72.0 67 56.7
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 8.0e-10 70.5 95 46.3
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-08 66.6 336 31.0
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 1.7e-07 62.8 57 52.6
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 6.3e-07 60.8 117 42.7
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 1.4e-06 59.7 315 24.4
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.4e-06 59.7 48 64.6
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 1.8e-06 59.3 248 25.8
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 2.4e-06 58.9 248 26.2
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 3.1e-06 58.5 248 26.6
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 4.1e-06 58.2 268 28.4
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 5.4e-06 57.8 248 25.4
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 7.0e-06 57.4 253 28.1


User provided reference genes

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