Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.5e-130 469.5 237 100.0
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.1e-113 412.5 239 88.3
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 9.0e-112 407.1 241 87.1
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.2e-110 402.5 239 87.0
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.1e-109 397.5 236 86.4
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 7.1e-109 397.5 236 86.4
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.1e-107 391.3 235 85.1
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.9e-102 375.6 235 82.1
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.5e-100 368.6 242 79.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.9e-93 346.3 236 76.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.2e-93 345.5 237 76.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.3e-91 339.3 184 89.7
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 3.9e-91 338.6 238 75.2
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.1e-90 337.0 177 92.7
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 3.3e-90 335.5 231 78.8
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 5.7e-90 334.7 218 79.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 9.7e-90 334.0 184 88.6
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 9.7e-90 334.0 236 74.6
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.3e-89 333.6 238 75.6
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.3e-89 333.6 236 74.2
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.2e-89 332.8 227 76.7
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.7e-89 332.0 193 87.0
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 4.8e-89 331.6 184 89.1
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.2e-89 330.9 184 88.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 8.2e-89 330.9 228 76.3
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.1e-88 330.5 236 73.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.4e-88 330.1 228 76.3
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.4e-88 330.1 234 73.5
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.3e-88 328.2 180 88.9
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.9e-88 327.8 229 74.7
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 6.9e-88 327.8 177 89.3
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 6.9e-88 327.8 224 78.1
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.2e-87 327.0 209 78.9
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 2.6e-87 325.9 218 77.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 2.6e-87 325.9 216 77.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.6e-87 325.9 216 77.3
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.6e-87 325.9 235 73.6
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.6e-87 325.9 216 78.2
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.4e-87 325.5 230 74.3
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.4e-87 325.5 235 71.9
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.4e-87 325.5 235 73.2
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.5e-87 325.1 216 76.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 4.5e-87 325.1 199 78.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 5.9e-87 324.7 202 82.2
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 7.7e-87 324.3 216 76.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.0e-86 323.9 217 77.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.3e-86 323.6 237 70.5
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-86 323.2 216 76.4
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.7e-86 323.2 237 72.6
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.7e-86 323.2 219 76.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 216 75.9
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 220 75.5
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.2e-86 322.8 237 70.0
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.9e-86 322.4 216 76.4
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 2.9e-86 322.4 238 71.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.9e-86 322.4 225 75.1
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.8e-86 322.0 220 74.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.8e-86 322.0 235 74.5
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 3.8e-86 322.0 226 74.8
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 5.0e-86 321.6 195 81.5
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 6.5e-86 321.2 224 76.3
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.5e-86 321.2 198 82.8
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.5e-86 320.9 182 86.3
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.5e-86 320.9 190 84.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 8.5e-86 320.9 240 72.9
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 239 73.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 179 88.8
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 199 79.9
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 163 94.5
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.9e-85 319.7 216 76.4
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.9e-85 319.7 221 75.1
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.9e-85 319.7 195 81.0
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.5e-85 319.3 193 81.9
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.2e-85 318.9 237 69.6
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.2e-85 318.5 236 72.0
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 5.5e-85 318.2 243 69.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 7.2e-85 317.8 236 69.5
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 9.4e-85 317.4 202 78.7
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.6e-84 316.6 207 79.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.7e-84 315.8 230 73.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.6e-84 315.5 221 74.2
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 3.6e-84 315.5 202 77.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.7e-84 315.1 218 76.6
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.7e-84 315.1 218 76.6
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-83 313.9 237 71.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.0e-83 313.9 237 72.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-83 313.5 217 74.7
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-83 313.5 218 76.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.8e-83 313.2 186 83.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.3e-83 312.8 236 68.6
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 3.0e-83 312.4 199 79.4
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.9e-83 312.0 175 85.7
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 5.1e-83 311.6 216 74.1
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 5.1e-83 311.6 234 69.7
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 6.7e-83 311.2 229 72.1
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 8.8e-83 310.8 166 89.2
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 8.8e-83 310.8 221 71.0
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.3e-82 308.9 218 74.8
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 4.4e-82 308.5 193 80.8
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 3.7e-81 305.4 181 80.7
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.1e-80 302.0 259 65.3
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.3e-80 301.6 209 74.2
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 9.1e-80 300.8 235 67.7
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 4.5e-79 298.5 177 81.4
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 7.7e-79 297.7 182 79.7
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.9e-78 295.8 171 83.0
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 5.0e-78 295.0 199 74.4
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.5e-78 294.7 173 85.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 5.2e-75 285.0 235 66.0
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 3.3e-74 282.3 239 64.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.7e-73 280.0 179 73.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.9e-69 266.5 150 84.0
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.2e-69 265.4 182 75.8
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.6e-68 263.5 192 68.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 8.0e-68 261.2 241 63.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 2.0e-66 256.5 158 71.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 9.7e-66 254.2 229 62.4
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 5.3e-64 248.4 217 58.5
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 7.0e-64 248.1 177 70.6
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.2e-58 230.7 120 93.3
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.8e-58 227.6 160 71.9
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.2e-49 199.9 158 65.8
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.1e-48 197.6 172 62.8
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.3e-46 190.7 142 69.0
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.1e-45 187.6 110 86.4
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.8e-43 180.3 109 79.8
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 7.5e-42 174.9 149 63.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 1.9e-40 170.2 94 84.0
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.0e-40 168.3 123 74.0
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-39 167.5 102 80.4
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.6e-39 167.2 102 79.4
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.3e-33 144.8 80 90.0
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.6e-31 139.0 123 61.8
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 4.6e-31 139.0 76 90.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 8.6e-30 134.8 147 41.5
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.2e-28 131.0 73 89.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.3e-27 126.7 69 92.8
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.3e-22 110.2 76 77.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.9e-17 92.4 49 89.8
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 9.3e-16 88.2 64 62.5
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 6.0e-15 85.5 90 53.3
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.5e-10 70.9 105 43.8
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-09 67.0 47 66.0
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.2e-09 67.0 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9


User provided reference genes

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