Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 3378.2 1845 100.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2945.2 1980 83.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2888.6 1927 83.1
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2877.4 1928 82.7
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2838.9 1927 82.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2827.7 1988 80.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2729.9 1788 81.0
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2397.9 1758 75.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2389.0 1925 69.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2374.0 1930 69.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2356.3 1929 68.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2347.8 1954 68.6
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2325.8 1934 69.0
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2325.1 1786 73.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2311.2 1937 68.6
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2291.5 1769 72.1
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2283.1 1938 68.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2271.9 1769 72.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2270.7 1767 71.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2269.6 1769 72.2
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2268.4 1933 66.7
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2263.0 1929 67.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1930 68.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2258.8 1772 71.4
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2252.6 1770 71.7
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2248.0 1770 72.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2247.6 1767 72.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2244.9 1959 66.1
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2243.8 1930 65.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2241.1 1766 72.3
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2234.9 1766 72.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2232.6 1936 66.7
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2230.7 1931 66.0
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2223.7 1929 66.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2209.1 1655 72.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2197.9 1786 67.7
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2195.6 1794 69.2
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1773 69.3
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2186.4 1778 69.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2184.1 2035 62.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2173.3 1902 66.7
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2156.7 1770 67.1
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2148.2 1780 69.6
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2138.2 1929 63.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2129.0 1766 69.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2126.7 1766 69.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2118.2 1935 64.4
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2117.4 1935 63.8
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2115.1 1777 67.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2108.6 1769 69.1
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2108.2 1775 67.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2101.6 1818 63.8
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2101.6 1755 68.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2099.7 1755 68.2
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2097.0 1770 67.2
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2083.1 1818 64.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2070.0 1772 65.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2068.9 1930 62.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2062.0 1743 67.5
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2056.2 1779 66.6
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2044.2 1767 65.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2041.5 1764 65.2
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2038.5 1802 64.5
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2033.5 1789 64.8
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2031.9 1778 66.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2023.4 1658 67.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2018.8 1766 64.6
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2014.2 1665 65.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1999.2 1653 65.9
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1993.0 1782 63.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1992.2 1767 65.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1966.0 1651 65.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1959.1 1762 64.5
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1944.1 1758 63.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1942.9 1778 63.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1937.9 1772 63.1
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1932.9 1782 64.9
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1909.0 1577 67.3
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1898.6 1673 63.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1890.5 1800 62.6
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1873.2 1780 61.1
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1855.5 1783 60.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1837.8 1767 61.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1767 61.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1814.3 1822 59.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1808.5 1813 58.1
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1805.8 1795 60.4
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1802.3 1811 58.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1792.3 1849 57.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1791.5 1749 59.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1789.6 1833 58.3
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1788.5 1814 58.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1786.5 1817 58.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1783.8 1814 58.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1782.7 1761 58.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1782.3 1831 58.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1782.3 1831 58.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1766.5 1706 58.7
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1765.7 1960 55.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1761.1 1786 57.6
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1746.5 1709 59.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1736.5 1979 54.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1736.1 1561 62.7
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1729.9 1781 57.3
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1688.7 1238 72.8
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1620.9 1792 55.9
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1560.0 1459 61.5
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1540.8 1782 52.9
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1497.6 1670 52.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1405.6 1876 49.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1394.4 1063 73.8
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1391.3 1777 47.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1382.5 1918 48.0
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1381.7 1781 47.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1381.7 1781 47.7
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1338.6 1106 69.4
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1337.8 1081 70.2
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1330.5 1941 46.3
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1328.5 1317 60.5
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1248.8 1333 55.9
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1224.9 1037 67.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1152.5 1657 45.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1150.6 1206 57.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1095.9 864 69.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.9e-303 1045.8 839 70.3
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.3e-290 1004.2 1729 41.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 8.4e-274 948.3 755 67.7
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 9.0e-268 928.3 1067 53.9
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.2e-257 892.1 793 61.8
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.6e-256 889.8 868 58.6
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-240 838.2 1703 36.0
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-218 763.8 614 69.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.1e-195 688.0 720 54.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-190 672.2 665 55.5
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.9e-189 666.8 653 55.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.9e-185 654.8 501 67.1
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 3.3e-169 600.9 626 55.4
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-167 594.7 453 73.3
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-159 568.5 558 61.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.9e-154 550.8 558 61.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.5e-118 431.0 366 62.6
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 5.2e-114 417.5 1244 28.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.9e-88 332.0 876 32.8
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 5.6e-84 317.8 2066 23.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.7e-80 305.1 647 34.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.7e-78 298.9 231 71.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.8e-73 281.2 470 38.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.7e-69 269.6 198 73.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 6.6e-69 267.7 274 66.1
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.9e-68 266.2 290 56.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 5.8e-57 228.0 272 48.9
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.8e-53 216.5 188 82.4
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.8e-45 189.9 239 52.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.3e-40 173.7 324 39.5
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.3e-37 162.9 275 40.0
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.1e-18 99.4 256 32.8
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 5.0e-16 92.0 127 71.7
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 5.0e-16 92.0 63 69.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.6e-14 87.0 87 54.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.6e-14 87.0 52 69.2
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.3e-08 67.4 33 84.8
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 3.2e-07 62.8 225 28.4
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 7.2e-07 61.6 224 28.1
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 9.4e-07 61.2 225 28.9
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 1.2e-06 60.8 224 28.1
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 1.2e-06 60.8 224 28.1
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 1.2e-06 60.8 224 28.1
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 1.2e-06 60.8 224 28.1
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 1.2e-06 60.8 38 78.9
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 1.6e-06 60.5 38 76.3
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 2.1e-06 60.1 225 28.9
BcaC02g07839 Brassica carinata HOM05D003335 ORTHO05D003853 3.6e-06 59.3 225 28.4
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 3.6e-06 59.3 225 28.4
C04p62760 Brassica napus HOM05D003335 ORTHO05D003853 3.6e-06 59.3 225 28.4
BolC4t27760H Brassica oleracea HOM05D003335 ORTHO05D003853 3.6e-06 59.3 225 28.4
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 3.6e-06 59.3 225 28.4
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 3.6e-06 59.3 38 68.4
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 3.6e-06 59.3 41 63.4
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 6.1e-06 58.5 225 27.6


User provided reference genes

Program Settings