Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0196 Durio zibethinus HOM05D000104 ORTHO05D004881 2.0e-152 542.7 343 100.0
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 6.7e-92 341.7 267 78.3
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 1.0e-84 317.8 262 65.6
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 2.0e-83 313.5 273 71.8
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 2.4e-81 306.6 273 68.9
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 4.1e-81 305.8 272 72.1
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.3e-81 305.4 209 78.0
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.3e-79 300.8 272 71.3
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.3e-79 300.8 272 71.3
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 2.0e-64 250.4 270 65.2
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 5.0e-63 245.7 270 62.2
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 9.5e-62 241.5 272 62.9
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 3.6e-61 239.6 207 61.4
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 8.0e-61 238.4 272 62.9
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 4.4e-59 232.6 210 61.9
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 7.5e-59 231.9 210 59.5
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 1.2e-56 224.6 210 58.1
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 1.2e-56 224.6 210 60.5
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 2.7e-56 223.4 271 58.3
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 1.0e-55 221.5 202 60.4
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 5.0e-55 219.2 210 59.0
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 8.6e-55 218.4 206 58.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.1e-54 218.0 268 48.5
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 1.5e-54 217.6 206 59.2
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 3.3e-54 216.5 204 60.3
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 3.3e-54 216.5 205 58.5
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 1.2e-53 214.5 206 57.3
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 1.2e-53 214.5 209 56.5
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 3.6e-53 213.0 205 57.6
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 1.0e-52 211.5 205 57.6
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 1.0e-52 211.5 272 59.6
TAR633G1573 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.8e-52 210.7 272 54.0
FAN10G4356 Fragaria x ananassa HOM05D012050 ORTHO05D004881 5.2e-52 209.1 274 52.2
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 2.0e-51 207.2 205 56.6
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 8.3e-50 201.8 278 46.0
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 1.1e-49 201.4 209 53.6
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.1e-49 201.4 211 54.5
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 1.9e-49 200.7 271 55.4
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 1.9e-49 200.7 209 55.0
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 3.2e-49 199.9 271 50.6
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 5.4e-49 199.1 208 54.8
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 9.2e-49 198.4 210 52.4
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.2e-48 198.0 217 53.5
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.2e-48 198.0 271 51.3
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 6.0e-48 195.7 275 54.5
FAN24G2688 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.0e-47 192.6 210 53.8
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 1.5e-46 191.0 210 53.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.3e-46 189.9 206 52.4
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 1.8e-44 184.1 273 56.8
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 5.2e-44 182.6 270 44.1
Lalb_Chr10g0106391 Lupinus albus HOM05D000104 ORTHO05D004881 6.8e-44 182.2 206 52.4
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 1.2e-43 181.4 194 53.1
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 1.5e-43 181.0 205 51.7
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 2.0e-43 180.6 203 50.7
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 3.4e-43 179.9 199 51.8
Actinidia06943 Actinidia chinensis HOM05D000104 ORTHO05D004881 4.4e-43 179.5 210 49.5
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 4.4e-43 179.5 208 50.5
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 7.5e-43 178.7 273 56.0
Hma1.2p1_1427F.1_g282920 Hydrangea macrophylla HOM05D000104 ORTHO05D004881 7.5e-43 178.7 210 51.0
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 9.8e-43 178.3 209 50.2
Eucgr.J00717 Eucalyptus grandis HOM05D000104 ORTHO05D004881 1.1e-41 174.9 205 51.7
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.4e-41 174.5 201 50.7
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 1.9e-41 174.1 211 48.3
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 1.6e-40 171.0 274 50.0
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 7.8e-40 168.7 180 56.7
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 1.0e-39 168.3 207 48.8
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.7e-39 167.5 210 48.6
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 2.3e-39 167.2 208 47.6
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 9.5e-38 161.8 186 54.3
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 3.1e-36 156.8 210 45.7
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 3.1e-36 156.8 205 46.3
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 2.9e-34 150.2 209 47.4
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 2.4e-33 147.1 241 43.6
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 2.1e-32 144.1 195 48.7
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 4.6e-32 142.9 275 36.7
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 8.6e-31 138.7 208 44.7
Psat5g195120 Pisum sativum HOM05D000104 ORTHO05D004881 4.3e-30 136.3 151 51.7
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 9.6e-30 135.2 175 48.0
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 1.2e-27 128.3 210 43.8
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 1.5e-27 127.9 210 43.8
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.0e-27 127.5 217 41.9
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 4.4e-27 126.3 199 43.7
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 2.2e-26 124.0 202 42.1
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 2.2e-26 124.0 202 42.1
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 3.8e-26 123.2 143 50.3
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 6.4e-26 122.5 192 46.4
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 6.4e-26 122.5 203 44.3
SHI27489 Sapria himalayana HOM05D000104 ORTHO05D004881 6.4e-26 122.5 206 42.7
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 1.1e-25 121.7 203 41.9
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 2.7e-24 117.1 200 41.0
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 7.8e-24 115.5 214 40.2
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 1.0e-23 115.2 205 41.5
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 6.6e-23 112.5 174 46.6
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 1.5e-22 111.3 209 41.1
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 1.5e-22 111.3 204 40.2
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 1.9e-22 110.9 212 36.8
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 3.3e-22 110.2 203 39.9
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 7.3e-22 109.0 207 40.6
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 9.6e-22 108.6 212 34.9
ATR0721G045 Amborella trichopoda HOM05D000104 ORTHO05D004881 2.1e-21 107.5 158 46.2
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 5.3e-20 102.8 217 34.1
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 1.5e-14 84.7 134 40.3
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 4.8e-13 79.7 183 38.3
SalBow6G0238 Salvia bowleyana HOM05D000104 ORTHO05D004881 6.2e-13 79.3 145 40.0
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.8e-12 77.8 135 40.0
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 7.6e-11 72.4 217 34.6
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 2.2e-10 70.9 218 33.5
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 3.2e-09 67.0 124 41.1
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 4.2e-09 66.6 220 33.6
Oeu061292.1 Olea europaea HOM05D000104 ORTHO05D004881 7.1e-09 65.9 187 35.3
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 2.3e-07 60.8 239 26.4
HPP92_006715 Vanilla planifolia HOM05D000104 ORTHO05D004881 3.0e-07 60.5 96 45.8
HPP92_006719 Vanilla planifolia HOM05D000104 ORTHO05D004881 3.0e-07 60.5 96 45.8
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 7.4e-06 55.8 212 24.1


User provided reference genes

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