Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 0.0e+00 1108.2 569 100.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.4e-280 968.4 571 86.3
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.1e-280 967.6 570 87.0
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.1e-278 960.7 575 86.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 6.6e-278 960.3 569 85.1
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.1e-275 951.4 565 85.5
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 7.6e-274 946.8 574 84.3
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.3e-273 946.0 569 84.0
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.9e-272 942.2 581 83.8
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 4.3e-269 931.0 579 83.4
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.6e-268 929.1 568 83.1
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 6.9e-267 923.7 568 81.7
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 9.0e-267 923.3 570 82.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.7e-265 919.1 568 81.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.4e-264 916.0 568 81.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.6e-263 912.5 571 82.3
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 3.0e-262 908.3 546 85.0
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.0e-262 908.3 570 80.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.9e-261 905.6 568 82.2
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 2.5e-261 905.2 571 83.4
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 5.6e-261 904.0 575 81.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.1e-260 902.1 567 82.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 8.1e-260 900.2 567 82.0
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 6.9e-259 897.1 568 80.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.5e-258 896.0 573 81.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.5e-258 896.0 567 81.0
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 4.5e-258 894.4 567 80.2
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.8e-258 894.0 582 80.9
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 7.6e-258 893.6 572 81.3
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.2e-257 892.1 574 79.6
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.2e-257 892.1 570 80.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.9e-257 891.7 582 80.8
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 4.9e-257 891.0 589 79.6
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 6.4e-257 890.6 569 79.1
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.9e-256 889.0 568 80.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 4.2e-256 887.9 567 80.8
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 7.1e-256 887.1 572 80.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 9.3e-256 886.7 569 79.4
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 9.3e-256 886.7 572 80.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-255 886.3 572 80.4
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 4.6e-255 884.4 567 78.8
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 3.9e-254 881.3 574 79.6
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 6.7e-254 880.6 577 78.9
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 6.7e-254 880.6 569 80.1
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.7e-254 880.2 528 85.6
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.5e-253 879.4 571 78.5
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 8.1e-252 873.6 573 80.6
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 3.1e-251 871.7 570 81.1
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 7.6e-250 867.1 569 78.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.0e-249 866.7 571 77.4
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.2e-249 865.5 572 78.7
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.9e-249 865.1 573 78.9
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.4e-248 862.8 573 77.8
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.4e-248 862.8 569 79.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.2e-248 861.7 573 78.7
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 4.2e-248 861.3 573 79.1
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.2e-247 859.8 633 71.9
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.1e-247 859.0 573 78.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 6.0e-247 857.4 573 78.2
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.6e-244 849.4 570 76.0
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.1e-244 849.0 569 77.5
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.3e-244 847.4 576 77.8
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 8.2e-244 847.0 574 78.0
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 2.4e-243 845.5 571 75.5
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-241 840.1 573 75.2
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-241 839.7 573 75.2
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.5e-241 837.4 573 74.7
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-240 836.6 573 74.7
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-239 832.8 562 77.0
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.3e-237 825.1 600 71.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 5.7e-237 824.3 553 77.2
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.8e-236 822.0 581 74.7
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 8.2e-236 820.5 736 61.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.6e-234 815.5 582 76.5
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.4e-234 815.1 562 76.0
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 7.7e-234 813.9 673 66.9
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.4e-232 809.7 571 73.9
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 7.9e-231 803.9 582 73.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 6.7e-230 800.8 579 73.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 5.3e-227 791.2 569 73.6
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 5.0e-225 784.6 519 79.2
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.1e-224 783.5 566 73.9
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.5e-224 782.3 589 71.6
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 7.2e-224 780.8 571 75.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 7.9e-223 777.3 569 72.9
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 8.8e-222 773.9 589 71.3
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.0e-221 772.7 506 77.9
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.1e-219 765.4 549 72.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.0e-217 760.4 579 67.9
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 1.0e-217 760.4 560 70.4
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.8e-217 758.4 558 72.4
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.1e-216 756.9 550 73.5
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.5e-216 756.5 561 69.9
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 3.0e-214 748.8 564 69.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.5e-213 746.5 500 75.8
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.1e-211 738.4 553 70.0
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.1e-211 738.4 553 70.0
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.1e-211 738.4 553 70.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 2.0e-210 736.1 550 70.0
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 5.9e-210 734.6 553 69.4
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 3.8e-209 731.9 553 69.3
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.5e-208 729.9 575 69.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-206 722.2 568 66.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.2e-204 716.1 559 67.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 8.8e-198 694.1 570 67.2
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.2e-196 689.5 567 65.6
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.8e-190 669.8 419 82.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 6.8e-190 667.9 489 71.8
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 7.0e-179 631.3 592 61.8
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 5.2e-158 562.0 384 77.1
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 6.0e-146 521.9 611 51.7
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.6e-141 505.0 609 50.6
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 9.9e-141 504.6 350 74.6
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-137 493.0 515 55.1
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-137 493.0 515 55.1
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-137 493.0 515 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.3e-127 461.1 480 56.0
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.2e-127 458.4 262 86.3
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.4e-88 330.1 261 68.2
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 2.2e-87 327.4 240 71.7
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 4.8e-87 326.2 554 42.1
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 4.8e-87 326.2 195 82.1
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 2.6e-80 303.9 339 54.6
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 3.7e-79 300.1 353 49.9
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 7.0e-78 295.8 160 91.2
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.3e-76 291.6 163 87.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.1e-74 284.3 164 86.0
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.6e-72 277.3 194 74.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 4.3e-67 260.0 425 41.4
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 7.3e-67 259.2 283 53.7
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.1e-66 257.7 170 81.8
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.3e-60 237.7 433 38.3
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.0e-52 210.7 430 38.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.2e-49 199.9 134 73.1
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 7.6e-48 196.1 180 65.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.8e-47 193.7 121 83.5
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.7e-45 187.6 114 81.6
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 8.7e-44 182.6 590 30.5
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 4.4e-40 170.2 215 49.8
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 7.1e-38 162.9 158 62.7
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.4e-30 138.7 73 90.4
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.4e-25 122.1 113 57.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.7e-23 115.2 75 74.7
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 3.2e-22 110.9 58 93.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 4.2e-22 110.5 138 47.1
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.5e-22 110.2 68 82.4
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-21 108.2 74 70.3
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.3e-20 105.5 69 76.8
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.3e-19 100.9 66 77.3
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 3.3e-19 100.9 184 37.5
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-16 92.0 137 40.1
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.9e-15 87.0 57 80.7
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 8.4e-15 86.3 86 51.2
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.0e-13 80.1 69 52.2
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 5.1e-12 77.0 49 81.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.1e-09 69.3 50 74.0
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.1e-09 67.4 36 86.1
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 5.9e-08 63.5 53 52.8
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 2.2e-07 61.6 53 50.9


User provided reference genes

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