Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43834 Davidia involucrata HOM05D000104 ORTHO05D004024 1.8e-102 375.9 193 100.0
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 7.9e-74 280.8 174 85.1
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 3.2e-67 258.8 184 73.9
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 4.2e-67 258.5 186 73.7
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 9.4e-67 257.3 185 77.8
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 4.7e-66 255.0 184 73.4
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 7.9e-66 254.2 193 71.5
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.0e-65 253.8 189 72.0
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 1.0e-65 253.8 185 74.6
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 1.8e-65 253.1 184 75.0
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 3.9e-65 251.9 189 73.0
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 1.8e-62 243.0 185 69.2
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.1e-62 241.9 190 72.1
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 4.1e-62 241.9 185 69.2
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.2e-61 240.4 190 71.6
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.2e-61 240.4 190 71.6
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.2e-61 240.4 190 71.6
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.5e-61 238.8 190 71.6
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 3.5e-61 238.8 193 69.9
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 4.5e-61 238.4 189 72.0
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 5.9e-61 238.0 190 70.0
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.3e-60 236.9 190 71.1
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 2.9e-60 235.7 184 70.1
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.5e-59 232.6 190 70.5
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 5.5e-59 231.5 189 68.8
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 9.4e-59 230.7 185 67.6
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.2e-58 230.3 183 68.9
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.2e-58 230.3 183 68.9
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 1.6e-58 229.9 193 66.3
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 1.6e-58 229.9 185 67.6
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 6.1e-58 228.0 194 66.0
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 6.1e-58 228.0 194 66.0
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 6.1e-58 228.0 184 68.5
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.0e-58 227.6 183 68.3
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.0e-58 227.6 184 69.0
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.4e-57 226.9 184 68.5
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 2.3e-57 226.1 187 65.2
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 3.0e-57 225.7 186 69.9
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 5.2e-57 224.9 184 68.5
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 1.1e-56 223.8 185 64.3
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 1.1e-56 223.8 194 63.4
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 2.6e-56 222.6 189 68.3
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 1.7e-55 219.9 194 62.9
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.8e-55 219.2 183 67.2
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 4.8e-55 218.4 189 63.5
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 1.1e-54 217.2 184 66.8
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.4e-54 216.1 183 66.7
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 3.1e-54 215.7 194 61.9
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 5.3e-54 214.9 194 60.8
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 5.3e-54 214.9 191 64.4
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 9.1e-54 214.2 185 61.6
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.2e-53 213.8 183 66.1
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.2e-53 213.8 184 63.6
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.2e-53 213.8 186 64.5
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 2.0e-53 213.0 185 61.1
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 2.6e-53 212.6 184 65.2
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 4.5e-53 211.8 188 61.7
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.9e-53 211.5 183 66.1
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.3e-52 210.3 188 62.8
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.3e-52 210.3 191 63.4
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 1.7e-52 209.9 185 63.2
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 1.7e-52 209.9 186 65.1
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 2.2e-52 209.5 185 63.2
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 2.9e-52 209.1 168 69.6
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 2.9e-52 209.1 185 60.5
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 3.8e-52 208.8 193 61.1
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 3.8e-52 208.8 190 62.1
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 8.5e-52 207.6 186 64.5
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 2.5e-51 206.1 187 64.2
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 5.5e-51 204.9 183 64.5
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 2.1e-50 203.0 186 60.2
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 2.7e-50 202.6 186 61.3
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 4.7e-50 201.8 186 58.1
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 6.1e-50 201.4 188 61.2
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 8.0e-50 201.1 186 60.8
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.4e-49 200.3 185 63.8
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.3e-49 199.5 190 60.5
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 4.0e-49 198.7 184 58.2
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 5.2e-49 198.4 184 61.4
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 5.2e-49 198.4 188 58.5
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.8e-49 198.0 190 61.1
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 6.8e-49 198.0 186 61.3
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 8.8e-49 197.6 190 60.5
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 8.8e-49 197.6 187 59.9
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 8.8e-49 197.6 188 61.2
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 1.2e-48 197.2 185 62.7
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 1.2e-48 197.2 185 62.7
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 4.4e-48 195.3 185 57.3
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 5.7e-48 194.9 177 62.7
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 1.7e-47 193.4 186 58.6
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 1.8e-46 189.9 185 58.9
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 2.4e-46 189.5 189 57.7
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.4e-46 189.5 186 59.7
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 3.1e-46 189.1 195 58.5
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 4.1e-46 188.7 191 57.1
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 9.1e-46 187.6 229 51.1
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 9.1e-46 187.6 186 59.7
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 1.2e-45 187.2 185 58.4
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 1.6e-45 186.8 188 56.9
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 2.0e-45 186.4 189 56.1
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.7e-45 186.0 191 56.5
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 5.9e-45 184.9 183 59.6
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 5.9e-45 184.9 183 59.6
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 1.0e-44 184.1 186 57.5
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.0e-44 184.1 178 58.4
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 1.3e-44 183.7 191 56.5
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 5.0e-44 181.8 185 56.8
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 5.0e-44 181.8 187 57.8
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 5.0e-44 181.8 188 55.3
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 8.5e-44 181.0 186 56.5
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 8.5e-44 181.0 185 56.8
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 8.5e-44 181.0 185 56.8
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 1.1e-43 180.6 185 59.5
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 1.9e-43 179.9 185 57.3
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 3.2e-43 179.1 185 56.2
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 3.2e-43 179.1 186 56.5
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 5.5e-43 178.3 185 56.2
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 9.4e-43 177.6 189 55.0
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 6.1e-42 174.9 187 59.4
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 6.8e-41 171.4 182 57.1
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 4.4e-40 168.7 189 52.4
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.3e-39 167.2 187 56.1
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.7e-39 166.8 185 54.1
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 8.3e-39 164.5 185 56.2
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 8.3e-39 164.5 188 55.9
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 2.4e-38 162.9 185 54.1
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 9.1e-38 161.0 192 52.1
MSTRG.26839 Avicennia marina HOM05D000104 ORTHO05D004024 2.0e-37 159.8 158 55.1
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 2.0e-37 159.8 193 51.8
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 2.0e-37 159.8 184 54.9
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 4.5e-37 158.7 192 51.6
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 1.0e-36 157.5 185 51.9
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 1.9e-35 153.3 192 50.5
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 1.2e-34 150.6 192 46.4
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 6.8e-33 144.8 188 46.8
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 2.0e-32 143.3 192 43.2
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 9.2e-30 134.4 178 48.3
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 6.6e-28 128.3 178 47.2
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 4.3e-27 125.6 87 77.0
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 2.6e-24 116.3 166 46.4
PGSC0003DMG402000051 Solanum tuberosum HOM05D000104 ORTHO05D004024 1.7e-23 113.6 99 62.6
C07p31570 Brassica napus HOM05D000104 ORTHO05D004024 3.2e-22 109.4 88 63.6
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.7e-20 103.6 192 39.1
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 2.3e-20 103.2 174 43.1
THA.LOC104827600 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.5e-19 100.5 71 71.8
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 9.5e-19 97.8 188 37.2
HPP92_025788 Vanilla planifolia HOM05D000990 ORTHO05D000810 1.8e-17 93.6 181 37.0
BcaC06g34217 Brassica carinata HOM05D000104 ORTHO05D004024 5.2e-17 92.0 57 75.4
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 2.0e-16 90.1 163 38.0
HPP92_025796 Vanilla planifolia HOM05D000990 ORTHO05D000810 5.8e-16 88.6 150 37.3
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.4e-14 84.0 52 78.8
BolC7t43696H Brassica oleracea HOM05D000104 ORTHO05D004024 1.7e-12 77.0 65 61.5
SEGI_34234 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 7.3e-11 71.6 173 32.9
Oeu010782.1 Olea europaea HOM05D000104 ORTHO05D004024 2.1e-10 70.1 52 61.5
SMO351G0468 Selaginella moellendorffii HOM05D000104 ORTHO05D004024 3.2e-06 56.2 158 29.1


User provided reference genes

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