Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 4.1e-215 751.1 381 100.0
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.0e-185 652.5 381 88.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.9e-173 611.7 379 83.4
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-172 608.2 365 83.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-172 608.2 365 83.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.6e-171 606.3 368 84.8
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.8e-170 602.8 379 84.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 8.9e-170 600.5 379 84.2
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.5e-169 599.7 379 81.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.1e-167 591.7 381 81.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.6e-166 588.2 381 79.8
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.0e-165 585.5 356 86.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.5e-164 582.4 359 83.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 7.3e-164 580.9 381 78.2
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-163 579.7 361 83.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.8e-162 576.2 361 83.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.4e-162 575.9 368 79.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.1e-162 575.5 373 80.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 5.2e-162 574.7 350 86.0
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.5e-161 573.2 369 81.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.6e-161 572.4 351 82.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.4e-161 571.6 370 79.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 4.4e-161 571.6 387 78.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 7.6e-161 570.9 375 80.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.3e-160 570.1 359 83.6
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.9e-160 568.9 327 88.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.4e-160 567.8 351 82.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 8.4e-160 567.4 354 81.1
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.9e-159 566.2 365 77.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.4e-159 565.8 357 81.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 9.2e-159 563.9 383 77.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.0e-158 561.2 374 79.4
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.0e-158 561.2 350 82.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 7.8e-158 560.8 470 65.7
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.7e-157 559.7 354 79.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.3e-157 559.3 357 80.7
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.0e-157 558.9 351 81.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.9e-157 558.5 354 79.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 8.7e-157 557.4 351 80.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.1e-156 557.0 359 79.9
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.1e-156 557.0 358 81.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.5e-156 556.6 376 76.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.5e-156 556.6 338 83.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.9e-156 556.2 323 87.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-156 556.2 357 80.1
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.9e-156 556.2 347 81.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.5e-156 555.8 357 80.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.5e-156 555.8 357 80.1
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.5e-156 555.8 323 86.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.5e-156 555.8 359 81.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.3e-156 555.4 354 79.1
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.3e-156 555.1 386 74.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 4.3e-156 555.1 338 84.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 7.3e-156 554.3 326 85.3
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 9.6e-156 553.9 325 87.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.6e-156 553.9 345 80.9
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.2e-155 553.5 347 80.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.2e-155 553.5 355 80.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.6e-155 553.1 357 79.3
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 2.8e-155 552.4 375 76.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.8e-155 552.4 385 76.9
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.8e-155 552.4 374 77.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.8e-155 552.4 353 78.8
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.6e-155 552.0 356 80.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 4.7e-155 551.6 359 79.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 8.1e-155 550.8 353 79.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-154 550.4 349 79.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.1e-154 550.4 375 75.2
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.8e-154 549.7 353 79.6
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.8e-154 549.7 354 78.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.4e-154 549.3 354 80.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 4.0e-154 548.5 355 80.3
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 5.3e-154 548.1 326 84.4
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 6.9e-154 547.7 397 72.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-153 546.6 372 78.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.5e-153 546.6 344 80.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.6e-153 545.8 352 79.8
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.6e-153 545.8 348 82.2
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-153 545.4 347 80.7
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.4e-153 545.4 342 81.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.3e-152 543.5 330 82.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.7e-152 543.1 379 76.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.2e-152 542.7 357 78.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.2e-152 542.7 327 84.1
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.9e-152 542.3 357 79.0
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.8e-152 542.0 352 79.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.4e-152 540.8 377 74.3
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.4e-151 539.3 358 77.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 4.2e-151 538.5 356 77.2
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.2e-150 537.0 358 76.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-150 536.6 357 78.2
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-150 536.6 358 77.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.1e-150 536.2 358 76.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.1e-150 536.2 358 76.8
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.1e-150 536.2 325 83.4
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-150 536.2 322 83.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.7e-150 535.8 358 77.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.7e-150 535.8 358 77.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.7e-150 535.8 354 79.1
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.5e-150 535.4 361 75.6
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.6e-150 535.0 358 76.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 4.6e-150 535.0 358 77.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.8e-150 534.3 359 77.7
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.0e-149 533.9 357 77.6
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.0e-149 533.9 371 73.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-149 533.9 351 78.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-149 533.9 380 73.2
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-149 533.5 357 77.0
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-149 533.5 358 77.1
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.3e-149 533.5 376 72.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.0e-149 532.3 359 76.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.0e-149 532.3 351 77.8
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.9e-149 531.9 317 85.2
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 5.1e-149 531.6 354 78.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 5.1e-149 531.6 354 78.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 8.7e-149 530.8 357 76.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 8.7e-149 530.8 361 74.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.3e-148 528.9 367 75.7
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-148 528.9 367 75.7
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 7.3e-148 527.7 357 77.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 7.3e-148 527.7 357 77.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 4.8e-147 525.0 435 66.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 6.2e-147 524.6 357 75.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.1e-147 524.2 326 80.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.4e-146 522.7 322 82.0
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 6.9e-146 521.2 421 68.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.2e-145 520.4 355 75.5
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.6e-145 519.2 328 81.7
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 5.8e-145 518.1 346 77.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 3.2e-143 512.3 366 73.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-143 511.9 366 74.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-143 511.9 366 74.0
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 5.1e-141 505.0 287 88.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.7e-141 504.6 300 83.3
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 6.7e-141 504.6 340 74.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.4e-140 501.1 287 87.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.1e-138 497.3 340 73.8
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.5e-137 493.4 358 72.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.6e-134 481.9 357 69.7
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-133 479.6 357 71.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.7e-133 478.0 329 72.6
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.8e-131 472.6 299 78.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.8e-131 471.9 334 72.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.4e-130 470.3 322 72.0
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.4e-130 470.3 301 77.4
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.1e-130 469.2 313 74.4
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.7e-126 456.1 314 72.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 5.7e-116 421.8 297 71.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 4.2e-111 405.6 258 81.4
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.0e-109 401.0 345 61.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.3e-109 399.8 250 82.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.7e-102 375.6 257 77.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 4.8e-99 365.5 290 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 9.7e-92 341.3 231 75.8
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.0e-80 304.7 271 63.1
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 5.0e-80 302.4 216 75.5
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.2e-79 299.3 382 49.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-71 273.9 186 75.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.1e-70 268.9 307 50.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.6e-49 201.1 112 84.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 8.9e-45 185.3 113 82.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 6.6e-40 169.1 170 60.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 6.6e-40 169.1 170 60.0
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 6.6e-40 169.1 170 60.0
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.4e-34 149.4 104 70.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 7.1e-34 149.1 304 33.6
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.6e-33 146.4 102 71.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.6e-33 146.4 102 71.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.0e-32 143.7 102 70.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 5.1e-32 142.9 98 71.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.1e-31 141.7 106 67.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.8e-30 137.1 107 62.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 5.3e-29 132.9 106 62.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 8.4e-19 99.0 64 73.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.8e-16 91.3 65 75.4
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 5.1e-16 89.7 102 51.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 8.7e-16 89.0 58 82.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.0e-08 65.5 38 76.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-07 62.0 38 73.7


User provided reference genes

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