Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.4e-52 208.0 101 100.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 6.0e-41 170.6 89 93.3
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.6e-33 146.0 89 80.9
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.1e-33 145.6 89 77.5
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-32 143.3 89 77.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.3e-32 142.9 89 71.9
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.8e-32 142.5 89 76.4
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.3e-32 142.1 89 77.5
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.1e-31 139.8 89 74.2
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.5e-31 139.4 89 74.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.5e-31 139.4 89 74.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.9e-31 139.0 89 77.5
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 5.7e-31 137.5 95 68.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.4e-31 137.1 89 73.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.4e-31 137.1 89 75.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 9.7e-31 136.7 89 74.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 9.7e-31 136.7 89 73.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 9.7e-31 136.7 89 75.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.2e-30 135.6 89 71.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.3e-30 134.0 89 74.2
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.3e-30 134.0 89 70.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 8.2e-30 133.7 89 75.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.4e-29 132.9 89 69.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.8e-29 132.5 89 70.8
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.1e-29 131.7 95 65.3
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.1e-29 131.7 83 78.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 5.3e-29 131.0 89 70.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 5.3e-29 131.0 93 69.9
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.9e-29 130.6 88 69.3
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 6.9e-29 130.6 88 69.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 9.0e-29 130.2 89 70.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.5e-28 129.4 89 69.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.6e-28 128.6 68 91.2
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 7.7e-28 127.1 89 66.3
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.7e-28 127.1 90 68.9
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.7e-28 127.1 94 68.1
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.9e-27 125.2 89 65.2
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.9e-27 125.2 89 66.3
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.9e-27 125.2 90 66.7
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.9e-27 125.2 93 67.7
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.8e-27 124.8 89 66.3
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.8e-27 124.8 89 67.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 6.5e-27 124.0 87 69.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.1e-26 123.2 89 67.4
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.1e-26 123.2 89 64.0
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.4e-26 122.9 89 66.3
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.9e-26 122.5 89 66.3
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.9e-26 122.5 85 70.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.5e-26 122.1 90 66.7
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.5e-26 122.1 88 67.0
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.5e-26 122.1 89 69.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.5e-26 122.1 89 64.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.2e-26 121.7 89 65.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.2e-26 121.7 89 65.2
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 4.2e-26 121.3 89 62.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 4.2e-26 121.3 94 60.6
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 7.2e-26 120.6 86 66.3
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.2e-25 119.8 89 65.2
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.2e-25 119.8 89 65.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.2e-25 119.8 97 60.8
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.6e-25 119.4 89 65.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.1e-25 119.0 89 64.0
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.7e-25 118.6 93 63.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.7e-25 118.6 98 59.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.6e-25 117.9 88 63.6
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.0e-24 116.7 89 61.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.4e-24 116.3 89 61.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-24 115.5 88 62.5
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 3.0e-24 115.2 104 56.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.1e-24 114.4 73 74.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 6.7e-24 114.0 87 63.2
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 6.7e-24 114.0 89 61.8
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 8.8e-24 113.6 88 63.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 8.8e-24 113.6 105 58.1
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.1e-23 113.2 87 63.2
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.1e-23 113.2 89 61.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-23 112.5 81 67.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-23 112.5 91 62.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-23 112.5 87 63.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.0e-23 112.5 87 63.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.0e-23 112.5 89 60.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 2.0e-23 112.5 90 61.1
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.0e-23 112.5 88 63.6
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.5e-23 112.1 85 62.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.3e-23 111.3 87 63.2
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 5.7e-23 110.9 91 60.4
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.7e-23 110.9 91 60.4
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.7e-23 110.9 91 60.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 5.7e-23 110.9 88 58.0
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 5.7e-23 110.9 89 59.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 7.4e-23 110.5 87 66.7
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.4e-23 110.5 89 58.4
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 9.7e-23 110.2 86 60.5
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 9.7e-23 110.2 90 56.7
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 9.7e-23 110.2 89 57.3
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.3e-22 109.8 90 62.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.3e-22 109.8 89 59.6
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.3e-22 109.8 90 58.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-22 109.4 91 59.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.7e-22 109.4 91 59.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 4.8e-22 107.8 91 59.3
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 4.8e-22 107.8 94 55.3
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.1e-21 106.7 90 58.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.4e-21 106.3 114 51.8
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.8e-21 105.9 89 65.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-21 105.5 92 55.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.4e-21 105.5 92 55.4
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.4e-21 105.5 92 55.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.2e-20 103.2 89 57.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.0e-20 102.4 89 59.6
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-20 102.4 89 59.6
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.0e-20 102.4 89 59.6
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.6e-20 102.1 89 57.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.4e-20 101.7 81 58.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.7e-19 99.4 81 56.8
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.2e-19 99.0 89 53.9
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.2e-19 99.0 89 53.9
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.2e-19 99.0 89 53.9
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.2e-19 99.0 89 53.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.8e-19 98.2 80 57.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.0e-19 97.8 89 53.9
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.2e-18 94.0 89 53.9
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 9.4e-18 93.6 90 53.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.6e-17 92.8 87 49.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.7e-17 92.0 87 49.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.6e-17 91.7 88 54.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.1e-17 90.9 59 74.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 6.1e-17 90.9 87 48.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.1e-17 90.9 87 48.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.9e-17 90.5 106 47.2
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 7.9e-17 90.5 89 51.7
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 7.9e-17 90.5 87 50.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.8e-16 89.4 93 47.3
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-15 86.7 69 62.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.5e-15 86.3 90 44.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.4e-15 84.7 57 68.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 7.4e-15 84.0 68 57.4
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.8e-14 82.0 89 50.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.7e-14 81.6 68 57.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.8e-13 79.3 49 77.6
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 7.0e-13 77.4 56 64.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 4.5e-12 74.7 90 40.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 5.9e-12 74.3 90 42.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.9e-10 69.3 48 64.6
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.7e-09 64.7 87 41.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 8.0e-09 63.9 82 39.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.4e-08 63.2 85 40.0
Dinv14042 Davidia involucrata HOM05D002297 ORTHO05D002385 1.1e-07 60.1 43 67.4
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.6e-07 58.9 57 45.6
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.3e-07 58.5 42 61.9
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 3.3e-07 58.5 63 46.0
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.4e-07 58.2 38 68.4
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 7.5e-07 57.4 50 56.0
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.2e-06 55.8 42 66.7


User provided reference genes

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