Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 9.4e-231 803.1 395 100.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.5e-220 769.2 389 95.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 9.7e-220 766.5 389 95.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.7e-219 765.8 389 95.6
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.7e-219 765.8 389 95.9
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.8e-218 762.3 389 95.6
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.1e-218 761.5 389 95.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 5.3e-218 760.8 387 95.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 9.1e-218 760.0 419 90.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.2e-217 759.6 386 96.4
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 2.0e-217 758.8 389 94.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.7e-217 758.4 385 96.4
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.7e-217 758.4 389 94.1
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 4.5e-217 757.7 390 94.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 4.5e-217 757.7 388 95.1
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 7.7e-217 756.9 390 94.4
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 7.7e-217 756.9 390 95.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.0e-216 756.5 390 94.6
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.7e-216 755.7 389 94.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.2e-216 755.4 388 94.6
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 6.5e-216 753.8 389 94.1
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 8.5e-216 753.4 388 93.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 8.5e-216 753.4 389 94.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 8.5e-216 753.4 389 93.8
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.1e-215 753.1 390 94.1
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.9e-215 752.3 386 94.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 2.5e-215 751.9 389 93.1
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.5e-215 751.9 390 93.8
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.5e-215 751.9 390 93.8
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.5e-215 751.9 390 94.4
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.2e-215 751.5 389 93.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.2e-215 751.1 388 92.8
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.2e-215 751.1 388 94.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 4.2e-215 751.1 389 93.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 5.5e-215 750.7 389 93.1
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 7.2e-215 750.4 390 93.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 7.2e-215 750.4 389 93.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 7.2e-215 750.4 389 93.3
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.2e-215 750.4 391 93.4
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 9.4e-215 750.0 390 93.6
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.6e-214 749.2 406 91.1
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-214 749.2 390 93.6
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 2.1e-214 748.8 389 93.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.1e-214 748.8 390 93.6
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 3.6e-214 748.0 390 93.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 3.6e-214 748.0 389 93.1
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 8.0e-214 746.9 389 93.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.0e-213 746.5 389 92.8
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.4e-213 746.1 390 93.6
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.4e-213 746.1 390 93.3
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.8e-213 745.7 391 93.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 4.0e-213 744.6 390 92.8
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 5.2e-213 744.2 389 92.3
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.2e-212 743.0 391 92.6
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.2e-212 743.0 391 91.8
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.2e-212 743.0 386 93.0
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.0e-212 742.3 388 93.6
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 2.0e-212 742.3 392 92.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.0e-212 742.3 387 92.5
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.6e-212 741.9 388 92.5
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 4.4e-212 741.1 393 91.9
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 5.7e-212 740.7 393 91.9
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.7e-212 740.7 393 91.9
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.7e-212 740.7 393 91.9
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.7e-212 740.7 393 91.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.5e-212 740.3 393 91.9
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 9.8e-212 740.0 388 92.3
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 9.8e-212 740.0 389 92.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 3.7e-211 738.0 382 92.9
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.7e-211 738.0 386 92.2
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.8e-211 737.6 392 91.8
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.1e-210 736.5 382 93.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.4e-210 736.1 392 91.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.8e-210 735.7 391 91.8
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.8e-210 735.7 391 91.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 3.1e-210 734.9 391 91.6
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 4.1e-210 734.6 391 91.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.4e-210 734.2 391 91.6
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.2e-209 733.0 391 91.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.2e-209 733.0 391 91.3
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.2e-209 733.0 391 91.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 5.9e-209 730.7 382 91.6
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 7.7e-209 730.3 403 88.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.9e-207 725.7 444 82.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.5e-207 724.2 384 91.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 9.5e-207 723.4 380 91.6
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 4.7e-206 721.1 396 89.6
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 6.8e-205 717.2 378 92.3
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 8.8e-205 716.8 397 88.9
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 9.8e-204 713.4 391 91.0
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.7e-201 705.3 383 87.2
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.5e-201 704.9 388 88.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 4.7e-198 694.5 348 96.0
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.1e-198 694.1 384 85.7
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.1e-198 694.1 384 85.7
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.2e-197 691.0 389 85.3
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 8.6e-192 673.7 366 87.2
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.5e-185 651.7 348 90.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.7e-182 641.3 367 83.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 8.3e-179 630.6 365 81.4
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 2.7e-177 625.5 314 94.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 2.1e-169 599.4 366 77.6
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-165 587.0 348 83.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.1e-165 587.0 281 98.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 9.0e-165 583.9 391 77.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.1e-154 547.7 348 79.9
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.1e-154 547.7 348 79.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.3e-143 511.9 389 69.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.1e-141 507.3 300 85.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.4e-141 506.9 382 67.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.3e-139 500.4 391 68.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.1e-133 480.7 233 97.4
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.7e-131 473.4 386 65.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.9e-130 469.9 258 90.3
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.8e-128 463.4 389 64.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.9e-124 448.4 389 65.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.0e-123 445.3 385 63.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.4e-120 437.2 241 88.0
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.6e-116 422.9 237 89.5
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.5e-107 391.7 356 60.1
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.5e-107 391.3 196 93.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-97 359.8 314 62.1
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-96 357.5 246 74.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 7.7e-92 341.7 305 63.3
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.3e-91 340.1 183 86.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 6.6e-91 338.6 389 52.4
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.4e-88 330.9 156 98.7
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.3e-86 324.3 164 93.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-85 320.9 326 58.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.2e-77 291.6 139 98.6
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.7e-76 290.0 181 84.5
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.5e-74 283.5 139 91.4
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 5.6e-74 282.3 176 83.5
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.1e-68 263.8 159 84.3
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.9e-66 257.3 158 82.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.0e-63 247.3 289 48.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 7.1e-61 238.8 129 86.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 6.2e-57 225.7 385 40.3
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.0e-51 206.8 133 79.7
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.1e-51 206.1 123 83.7
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.9e-50 204.1 391 37.6
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 4.7e-49 199.5 105 90.5
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-46 191.0 326 37.1
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-46 190.7 138 70.3
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 6.4e-46 189.1 89 97.8
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-45 187.6 113 83.2
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.2e-45 186.4 280 43.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 3.7e-33 146.7 98 77.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.5e-29 134.0 147 53.7
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 4.6e-28 129.8 75 86.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.8e-27 127.9 73 89.0
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 9.6e-26 122.1 58 94.8
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.4e-24 117.5 86 74.4
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-16 92.0 47 91.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 9.0e-16 89.0 49 85.7
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-15 88.2 63 68.3
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-14 84.0 59 69.5
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.5e-14 82.8 38 92.1
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 1.6e-12 78.2 60 71.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 1.8e-11 74.7 49 75.5
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 1.2e-07 62.0 51 68.6


User provided reference genes

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