Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 2382.4 1317 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2080.1 1317 83.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2054.6 1303 83.1
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 2034.2 1317 81.2
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 2008.0 1317 80.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1989.9 1317 79.1
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1963.3 1321 79.8
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1946.0 1317 77.3
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1937.2 1317 78.1
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1922.1 1317 77.3
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1901.7 1317 77.5
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1882.8 1549 68.2
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1874.4 1317 75.2
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1869.0 1317 75.4
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1866.7 1317 74.0
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1864.7 1317 75.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1854.0 1317 74.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1852.0 1317 74.4
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1850.5 1365 73.2
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1848.2 1317 74.0
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1848.2 1317 74.5
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1848.2 1436 70.0
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1845.9 1317 74.3
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1842.8 1317 74.0
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1837.0 1317 75.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1828.1 1317 73.9
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1817.7 1317 73.0
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1814.3 1317 72.3
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1802.3 1317 73.3
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1797.7 1318 72.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1788.5 1317 72.1
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1787.7 1317 72.1
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1784.2 1317 71.9
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1778.5 1317 72.5
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1773.4 1317 71.5
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1767.3 1317 71.1
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1757.7 1317 70.5
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1757.3 1317 69.8
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1753.4 1325 70.7
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1751.9 1303 71.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1751.5 1317 69.7
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1745.7 1317 70.5
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1743.8 1210 76.3
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1743.4 1343 70.8
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1738.0 1401 68.8
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1736.9 1317 70.9
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1734.5 1317 71.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1723.8 1340 69.9
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1715.7 1332 70.0
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1715.7 1317 69.6
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1715.3 1332 70.0
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1715.3 1359 68.9
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1715.3 1318 70.0
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1710.3 1317 71.1
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1708.7 1370 68.0
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1700.3 1210 75.0
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1682.5 1317 68.3
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1677.9 1261 71.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1673.7 1317 67.3
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1651.0 1317 68.2
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1631.3 1318 67.8
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1630.2 1337 66.9
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1629.0 1318 67.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1627.8 1318 67.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1627.5 1318 67.5
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1626.7 1317 65.7
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1617.4 1370 66.6
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1615.9 1317 66.0
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1614.0 1254 69.4
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1605.9 1303 65.9
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1589.3 1317 64.7
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1585.1 1303 65.2
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1579.7 1303 66.5
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1574.7 1317 63.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1571.2 1317 64.1
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1258.0 1317 52.5
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1153.3 1062 58.4
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1135.9 1317 48.7
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1108.6 1025 60.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1106.3 1312 47.9
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1100.1 902 67.4
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 7.3e-296 1021.1 743 72.1
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.6e-293 1011.1 759 71.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 9.9e-293 1010.7 1059 54.5
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.2e-291 1005.7 888 61.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.6e-290 1003.4 1316 45.3
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 2.0e-285 986.5 669 78.6
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 2.0e-269 933.3 761 64.3
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.8e-269 931.8 1102 50.4
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-268 930.6 767 66.0
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.5e-267 926.4 1251 44.8
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.1e-266 923.3 631 75.6
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.7e-266 922.9 631 75.4
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 8.5e-244 848.2 790 62.2
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.4e-243 847.4 725 63.7
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.1e-241 839.0 631 70.8
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.0e-236 824.7 558 77.4
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 4.2e-235 819.3 724 60.1
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 4.8e-223 779.2 1263 38.2
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 5.9e-221 772.3 732 59.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.7e-221 771.9 594 69.5
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.7e-221 771.9 594 69.5
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 6.8e-209 732.3 594 68.4
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 6.2e-170 602.8 1373 32.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.3e-164 584.3 350 86.0
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.8e-162 577.4 524 60.5
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.0e-157 559.7 375 77.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.0e-151 542.3 436 68.6
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-149 535.0 458 65.5
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.1e-142 512.3 383 69.7
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.1e-142 512.3 1363 31.5
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.6e-141 507.3 294 88.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.3e-140 505.4 1401 30.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.0e-121 439.9 222 97.3
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 9.1e-121 439.5 244 90.6
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 4.7e-117 427.2 264 84.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.5e-115 422.2 1329 26.4
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 3.7e-114 417.5 318 71.1
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 9.1e-113 412.9 224 91.1
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.0e-111 407.1 408 56.9
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 7.5e-107 393.3 394 57.6
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.9e-102 378.6 853 34.6
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.0e-95 356.3 187 95.2
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.7e-90 337.8 223 78.5
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.7e-74 284.6 235 63.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.7e-64 251.9 126 96.0
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.3e-54 218.0 140 82.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.6e-51 207.2 139 80.6
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 6.4e-50 204.1 192 58.3
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.1e-46 193.4 170 60.6
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-39 169.5 165 58.2
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.3e-37 163.3 87 94.3
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-36 160.2 226 46.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.5e-35 154.8 106 77.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-33 150.2 72 95.8
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-29 134.8 100 68.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 4.5e-27 128.3 130 52.3
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.3e-23 115.9 100 64.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 3.7e-21 108.6 64 84.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 6.3e-21 107.8 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 3.1e-20 105.5 106 58.5
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-19 103.6 77 72.7
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-17 97.1 90 58.9
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 3.6e-16 92.0 265 29.8
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.7e-13 83.2 77 58.4
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 2.5e-09 69.3 63 63.5
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 5.5e-09 68.2 63 55.6
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.2e-08 67.0 63 54.0
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 6.1e-08 64.7 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 8.0e-08 64.3 56 67.9
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.8e-07 60.8 33 90.9


User provided reference genes

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