Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 4.0e-190 667.9 337 100.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 6.3e-159 564.3 341 87.1
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.6e-154 548.5 339 84.4
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.9e-154 547.4 337 83.7
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 3.2e-147 525.4 336 81.2
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.7e-146 522.3 337 80.7
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.0e-145 520.4 340 79.1
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.0e-145 520.4 340 77.4
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.0e-145 520.4 340 77.4
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.2e-143 512.7 337 80.1
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.7e-143 511.9 341 80.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.7e-143 511.9 345 78.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.8e-143 511.5 337 76.9
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 4.5e-141 505.0 338 78.1
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 5.0e-140 501.5 337 77.2
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 3.2e-139 498.8 335 77.6
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 5.5e-139 498.0 338 76.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 9.4e-139 497.3 342 77.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-138 496.1 342 75.4
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 4.7e-138 495.0 338 75.7
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 6.1e-138 494.6 339 75.2
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.0e-137 493.8 344 77.0
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.0e-137 493.8 339 75.5
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.4e-137 493.4 339 75.5
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.4e-137 493.4 339 75.8
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 4.0e-137 491.9 337 75.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 5.2e-137 491.5 337 76.0
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 5.2e-137 491.5 335 75.8
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 2.0e-136 489.6 337 75.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.0e-136 489.6 339 74.9
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.3e-136 488.8 337 75.7
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.7e-136 488.0 338 75.7
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 7.4e-136 487.6 337 74.8
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 9.7e-136 487.3 338 75.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 9.7e-136 487.3 339 76.1
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.2e-135 486.1 336 75.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.8e-135 485.7 337 76.0
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 6.3e-135 484.6 337 74.2
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 6.3e-135 484.6 338 74.3
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 8.2e-135 484.2 340 73.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 8.2e-135 484.2 337 74.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.1e-134 483.8 337 76.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-134 483.4 336 75.6
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.8e-134 483.0 336 75.3
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 3.1e-134 482.3 338 74.9
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.6e-133 479.9 337 73.9
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.6e-133 479.2 339 75.2
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.0e-132 477.2 340 75.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.3e-132 476.9 338 72.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.3e-132 476.9 337 72.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 2.9e-132 475.7 328 75.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.9e-132 475.7 349 75.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 3.8e-132 475.3 336 75.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.9e-131 473.0 337 73.0
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.9e-131 473.0 341 74.2
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 5.5e-131 471.5 337 73.0
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 5.5e-131 471.5 335 74.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.5e-131 471.5 339 72.3
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 9.4e-131 470.7 338 73.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.6e-130 469.9 339 72.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.0e-130 467.6 322 76.4
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.0e-129 467.2 339 71.7
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.4e-129 466.8 340 72.4
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.4e-129 466.8 338 70.7
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.3e-129 466.1 339 71.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.3e-129 466.1 340 71.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 5.2e-129 464.9 339 71.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 5.2e-129 464.9 337 72.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 6.8e-129 464.5 339 72.6
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.8e-129 464.2 337 73.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.5e-128 463.4 340 70.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-128 463.4 339 71.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.6e-128 462.6 338 71.0
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.6e-128 462.6 338 71.9
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 3.4e-128 462.2 335 71.3
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.7e-127 458.8 338 70.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.7e-127 458.8 337 73.0
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 6.3e-127 458.0 339 71.4
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.7e-125 452.6 343 69.4
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.5e-125 452.2 338 68.3
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 4.5e-125 451.8 360 70.6
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 5.9e-125 451.4 383 65.0
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.0e-124 450.7 339 69.9
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.7e-124 449.9 335 70.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.9e-124 449.1 336 70.8
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 6.5e-124 448.0 338 68.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.2e-123 445.7 337 69.7
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 5.5e-123 444.9 334 69.8
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-122 443.7 359 66.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.1e-122 443.0 338 68.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.1e-122 443.0 342 70.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.0e-122 441.0 339 67.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.0e-122 441.0 338 68.9
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-121 440.3 335 67.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.2e-120 437.2 331 69.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.2e-120 437.2 331 69.5
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 7.5e-120 434.5 338 67.2
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 7.5e-120 434.5 328 68.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.8e-119 432.6 334 67.4
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.4e-118 429.5 343 67.9
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.0e-116 424.1 359 65.7
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.0e-116 424.1 359 65.7
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.3e-115 419.1 361 63.4
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-110 404.1 338 64.5
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.1e-110 404.1 342 62.9
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.5e-109 399.1 340 64.7
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 5.9e-109 398.3 266 77.8
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.0e-108 397.5 355 63.7
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.1e-107 394.0 330 62.4
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.5e-107 393.7 292 72.9
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 9.5e-107 391.0 359 60.7
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 4.7e-106 388.7 355 61.7
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.4e-102 376.3 356 58.7
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.0e-100 370.9 341 61.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.4e-94 350.5 322 60.2
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.6e-93 347.1 328 62.8
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.7e-87 327.0 233 73.8
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.1e-85 320.1 248 71.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-77 293.5 214 72.0
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.6e-74 283.9 268 63.1
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 6.9e-73 278.5 354 47.7
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.6e-72 276.6 267 58.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 3.9e-68 262.7 192 71.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.8e-64 248.8 187 67.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 7.1e-62 241.9 381 42.0
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.5e-59 234.2 357 42.6
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.9e-59 233.8 356 42.1
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.1e-58 230.3 345 42.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 8.4e-55 218.4 350 42.0
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.1e-54 218.0 216 55.1
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.1e-54 218.0 227 55.9
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.5e-46 190.3 368 37.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 5.1e-44 182.6 181 51.9
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.9e-36 156.4 356 33.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 7.7e-32 142.1 343 34.4
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.5e-30 136.0 120 66.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.3e-27 126.7 367 31.9
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 4.8e-26 122.9 128 52.3
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.1e-25 119.8 147 48.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-24 117.9 106 54.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-23 115.2 85 68.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.9e-23 113.6 87 58.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 87 57.5
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.2e-22 109.8 125 44.0
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.6e-21 107.8 105 61.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.8e-17 94.4 81 63.0
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.0e-15 88.6 150 34.0
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 4.2e-14 83.2 149 30.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 8.0e-13 79.0 55 67.3
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-12 78.6 59 66.1
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 4.0e-12 76.6 41 85.4
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 6.8e-12 75.9 73 53.4
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.8e-10 70.5 53 58.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.8e-10 69.7 177 31.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 7.7e-08 62.4 43 69.8


User provided reference genes

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