Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 0.0e+00 1403.3 763 100.0
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 0.0e+00 1184.5 707 86.3
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 4.2e-304 1047.7 689 77.2
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 9.1e-299 1030.0 700 75.4
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 7.7e-290 1000.3 741 69.8
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 3.3e-288 995.0 709 72.1
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 2.8e-284 981.9 704 70.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 5.4e-283 977.6 708 71.3
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 5.4e-275 951.0 707 69.2
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 4.6e-274 948.0 707 68.9
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 1.5e-269 932.9 708 66.8
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.1e-259 900.2 706 65.6
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 4.6e-258 894.8 708 65.5
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 6.6e-257 891.0 695 67.1
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 7.3e-256 887.5 650 68.3
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 6.2e-255 884.4 657 68.2
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 2.0e-253 879.4 856 57.2
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.8e-252 875.2 687 65.9
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.4e-251 872.5 670 67.3
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.2e-251 872.1 707 64.1
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.3e-249 865.9 681 66.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 5.1e-249 864.8 657 66.5
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 4.3e-248 861.7 672 66.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 7.3e-248 860.9 707 64.4
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.6e-247 858.6 709 63.2
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 9.0e-246 854.0 692 64.5
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.6e-245 852.4 642 69.9
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 4.4e-245 851.7 681 65.8
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 8.4e-244 847.4 681 65.6
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.2e-243 845.5 681 65.1
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.7e-241 839.7 654 65.4
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 8.7e-241 837.4 657 65.0
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 7.3e-240 834.3 678 62.8
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 9.6e-240 833.9 707 61.2
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.3e-239 833.6 657 65.0
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 2.1e-239 832.8 657 65.3
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 2.1e-239 832.8 739 59.9
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 6.2e-239 831.2 656 64.3
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 3.8e-236 822.0 706 59.2
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.9e-235 819.7 664 62.7
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 5.4e-235 818.1 703 61.9
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 4.6e-234 815.1 660 63.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 1.9e-232 809.7 662 63.6
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 3.3e-232 808.9 664 62.8
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 4.3e-232 808.5 705 61.4
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.7e-231 805.4 660 63.3
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 4.0e-230 802.0 705 59.6
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 4.0e-230 802.0 558 73.7
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 5.3e-230 801.6 712 59.8
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 9.0e-230 800.8 708 58.2
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.5e-229 800.0 1058 46.1
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.0e-229 799.7 687 61.1
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.8e-229 798.1 660 62.4
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.4e-227 793.5 703 59.7
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.9e-227 793.1 693 60.6
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.2e-227 792.3 708 59.2
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 1.1e-224 783.9 706 60.1
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 9.6e-224 780.8 707 57.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.3e-223 780.4 648 61.4
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 5.3e-222 775.0 660 60.8
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 5.3e-222 775.0 649 59.9
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 9.0e-222 774.2 667 58.8
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.2e-221 773.9 649 59.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.0e-221 773.1 660 60.6
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 2.0e-221 773.1 707 58.1
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 3.4e-221 772.3 666 61.4
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 1.0e-220 770.8 650 60.2
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.0e-220 770.8 679 60.7
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.0e-220 768.5 658 60.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 9.3e-219 764.2 652 59.2
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 6.1e-218 761.5 706 56.8
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 7.9e-218 761.1 623 62.1
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 7.9e-218 761.1 649 59.5
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 2.3e-217 759.6 616 61.7
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 6.7e-217 758.1 649 59.2
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.2e-215 753.1 720 56.0
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.2e-215 753.1 658 60.3
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.5e-213 746.9 651 58.8
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.5e-213 746.9 660 58.5
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.0e-212 744.2 648 59.7
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 7.2e-211 738.0 676 58.1
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 3.7e-207 725.7 642 58.3
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 9.1e-206 721.1 618 60.2
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 5.0e-204 715.3 623 58.6
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-203 714.1 681 58.1
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 3.2e-203 712.6 647 55.5
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 7.2e-203 711.4 653 55.4
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 6.1e-202 708.4 652 55.1
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 7.9e-202 708.0 654 55.0
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.0e-201 707.6 654 55.0
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 6.3e-199 698.4 649 55.3
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 9.1e-198 694.5 649 56.1
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.6e-197 693.0 603 60.0
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 4.4e-192 675.6 564 61.2
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 6.5e-188 661.8 574 59.6
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.2e-184 651.0 685 55.3
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.5e-176 624.0 605 53.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 4.0e-169 599.4 609 51.9
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 5.6e-163 578.9 381 77.2
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.6e-162 577.4 479 61.8
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 5.8e-128 462.6 675 43.4
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 5.3e-113 412.9 338 61.8
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 2.5e-107 394.0 619 41.8
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 1.2e-104 385.2 306 65.4
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.4e-102 378.3 595 38.7
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.2e-102 376.7 681 38.5
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 7.9e-101 372.5 576 38.9
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 3.3e-99 367.1 604 36.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.3e-90 336.3 347 51.6
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 2.6e-83 314.3 236 66.9
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 7.4e-83 312.8 577 35.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.9e-56 223.4 196 54.1
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 4.7e-53 213.8 589 29.4
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 5.6e-46 190.3 670 29.6
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 4.4e-43 180.6 631 25.4
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 7.5e-43 179.9 670 25.2
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.2e-42 178.3 170 57.1
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 2.4e-41 174.9 207 48.8
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.0e-31 142.9 158 49.4
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.9e-31 141.0 107 66.4
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 6.2e-29 133.7 549 24.4
Dinv03716 Davidia involucrata HOM05D000349 ORTHO05D029215 6.4e-26 123.6 81 71.6
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.2e-25 121.3 147 48.3
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 2.2e-18 98.6 149 41.6
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 2.4e-17 95.1 100 50.0
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 4.2e-17 94.4 92 53.3
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.0e-15 89.7 125 43.2
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 5.1e-15 87.4 74 59.5
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 6.6e-15 87.0 104 42.3
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 2.8e-13 81.6 66 62.1
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.7e-10 72.4 67 53.7
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-07 60.5 146 30.1


User provided reference genes

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