Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 2334.7 1292 100.0
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1886.7 1230 81.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1823.5 1268 78.7
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1808.5 1238 78.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1738.4 1191 80.4
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1709.9 1194 77.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1672.5 1231 73.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1670.2 1254 74.2
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1662.5 1236 73.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1649.0 1230 73.6
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1644.0 1232 72.7
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1643.2 1237 72.4
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1642.9 1227 72.3
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1642.5 1232 71.6
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1640.2 1233 73.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1639.8 1231 72.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1639.4 1230 73.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1637.9 1236 72.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1637.5 1233 72.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1635.5 1238 73.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1633.6 1234 72.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1631.7 1232 72.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1630.9 1233 72.2
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1629.4 1231 72.8
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1621.7 1238 73.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1620.9 1230 72.6
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1620.5 1231 72.3
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1620.1 1229 72.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1231 71.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1224 73.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1611.7 1229 71.7
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1609.3 1200 73.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1607.4 1232 70.9
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1605.1 1232 72.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1596.6 1239 71.0
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1587.8 1229 71.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1573.5 1230 69.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1572.4 1230 72.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1569.3 1232 70.0
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1568.9 1230 69.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1568.1 1184 71.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1564.3 1228 71.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1563.5 1245 70.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1563.1 1220 69.7
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1556.6 1220 69.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1553.1 1234 69.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1552.3 1234 69.3
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1549.6 1220 69.1
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1546.9 1225 69.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1544.6 1239 69.4
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1543.5 1234 70.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1541.9 1229 70.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1540.4 1240 69.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1540.4 1234 69.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1540.0 1200 70.8
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1536.9 1233 71.3
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1536.9 1232 67.5
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1535.4 1234 70.1
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1529.2 1192 70.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1526.9 1234 69.9
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1524.6 1267 67.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1524.6 1231 68.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1521.1 1225 71.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1520.0 1236 68.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1518.8 1332 64.7
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1518.4 1229 68.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1517.3 959 86.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1508.0 1243 68.4
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1503.8 1241 69.5
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1484.2 1234 67.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1483.8 1245 66.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1472.6 1246 66.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1469.5 1260 66.0
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1467.2 1230 66.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1465.7 1248 67.5
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1464.5 1232 68.1
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1462.2 1238 66.0
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1453.7 1244 65.8
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1452.2 1231 66.3
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1448.3 1229 66.4
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1429.8 1223 66.6
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1424.5 1233 66.2
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1404.8 1253 64.3
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1397.1 1063 73.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1362.8 1230 62.6
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1360.1 1230 62.5
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1357.4 1234 64.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1328.5 1227 61.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1319.7 1236 60.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1275.0 1238 59.7
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1241.5 1233 59.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1238.8 1233 58.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1212.2 1187 59.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1201.4 1254 57.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1189.1 1285 54.2
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1183.3 1255 57.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1179.5 1246 56.5
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1176.0 1247 55.9
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1174.1 1234 55.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1173.3 1233 57.5
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1173.3 1246 56.5
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1172.1 1253 54.7
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1172.1 1260 55.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1171.8 1252 54.9
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1170.6 1258 55.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1164.8 1251 54.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1164.1 1260 55.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1164.1 1260 55.2
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1162.1 1252 54.8
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1160.6 1248 56.5
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1153.7 1262 55.7
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1140.2 1237 54.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1098.6 1236 53.1
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.5e-290 1001.9 1261 51.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 9.1e-283 977.6 1249 48.8
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 9.1e-283 977.6 1249 48.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 1.2e-271 940.6 1303 47.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.2e-269 934.1 1227 48.2
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 4.7e-263 912.1 1268 47.7
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 2.0e-261 906.7 1234 47.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 1.6e-258 897.1 1270 46.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.2e-252 876.7 799 62.3
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 7.0e-243 845.1 641 73.0
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 7.1e-235 818.5 720 62.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 5.3e-166 589.7 930 46.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 7.7e-149 532.7 391 76.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.0e-140 505.8 1252 33.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 4.7e-138 496.9 469 59.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.0e-137 493.8 322 84.2
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.9e-111 407.9 348 63.5
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.2e-110 404.1 244 92.2
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-89 335.1 224 80.8
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.1e-89 334.7 646 36.8
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.1e-83 316.2 453 42.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 4.3e-83 314.3 457 44.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.1e-82 312.0 279 65.2
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.8e-82 310.8 198 83.3
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.9e-78 298.9 411 43.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 9.4e-54 216.9 890 27.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.4e-51 208.0 139 81.3
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.0e-49 200.7 211 57.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 2.3e-44 185.7 166 63.3
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.3e-39 169.9 146 67.8
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.1e-38 166.8 144 70.1
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 9.4e-38 163.7 182 53.8
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.5e-22 112.5 59 91.5
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 7.3e-22 110.9 88 69.3
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.0e-19 102.8 87 59.8
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.7e-18 98.6 320 26.6
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.3e-15 89.4 91 52.7
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 3.9e-15 88.6 63 68.3
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-13 83.2 53 67.9
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 8.6e-07 60.8 53 62.3
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 4.3e-06 58.5 42 69.0
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 5.6e-06 58.2 42 69.0
Hma1.2p1_0214F.1_g090630 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.5e-06 57.4 40 75.0
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.5e-06 57.4 45 64.4


User provided reference genes

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