Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.5e-129 466.1 223 100.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 4.8e-107 391.3 211 88.2
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 5.5e-103 377.9 223 81.2
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-101 373.2 211 82.5
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.3e-101 372.5 209 84.2
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.3e-100 368.6 211 82.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.3e-100 368.6 211 82.0
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.4e-98 363.2 211 79.1
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.1e-98 361.7 211 81.5
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 3.6e-94 348.6 211 75.8
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 4.7e-94 348.2 211 75.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 6.1e-94 347.8 211 76.8
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 8.0e-94 347.4 211 77.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 3.0e-93 345.5 211 76.3
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 3.0e-93 345.5 211 76.3
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 8.8e-93 344.0 208 77.4
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 4.4e-92 341.7 213 76.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.7e-92 341.3 267 65.9
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.3e-91 340.1 211 75.4
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.8e-90 336.3 211 76.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.8e-90 336.3 211 73.5
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 5.3e-90 334.7 204 77.0
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.6e-89 333.2 211 73.9
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.9e-89 331.3 211 73.0
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 7.7e-89 330.9 211 74.9
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 7.7e-89 330.9 211 75.4
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.3e-88 330.1 211 72.5
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.7e-88 329.7 211 73.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.2e-88 329.3 211 73.9
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.8e-88 328.6 211 70.6
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 5.0e-88 328.2 211 73.9
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 8.5e-88 327.4 211 74.9
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.1e-87 327.0 207 74.4
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.9e-87 326.2 211 73.0
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 3.2e-87 325.5 211 73.0
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 5.5e-87 324.7 210 74.3
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 5.5e-87 324.7 211 73.9
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.6e-86 323.2 211 71.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.7e-86 322.4 211 70.1
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 4.7e-86 321.6 211 71.6
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 4.7e-86 321.6 211 70.6
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 8.0e-86 320.9 211 72.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 8.0e-86 320.9 207 73.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.0e-85 320.5 211 70.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.0e-85 320.5 211 73.0
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-85 320.1 211 70.6
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.3e-85 319.3 211 70.1
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.2e-85 318.2 211 73.5
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 6.8e-85 317.8 211 73.0
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.2e-84 317.0 215 70.2
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.2e-84 317.0 211 73.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.5e-84 316.6 211 68.7
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.6e-84 315.8 213 72.3
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.4e-84 315.1 211 68.2
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 4.4e-84 315.1 211 72.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 5.7e-84 314.7 211 67.8
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 5.7e-84 314.7 211 70.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 7.5e-84 314.3 211 71.1
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 9.8e-84 313.9 211 69.7
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 9.8e-84 313.9 211 69.7
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 9.8e-84 313.9 212 69.8
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 9.8e-84 313.9 212 69.8
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 9.8e-84 313.9 211 69.7
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 9.8e-84 313.9 211 67.8
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-83 313.5 212 69.8
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.3e-83 313.5 212 69.8
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.7e-83 313.2 211 70.1
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.2e-83 312.8 211 69.7
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.8e-83 312.4 211 69.2
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.8e-83 312.4 211 70.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 3.7e-83 312.0 211 70.1
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 6.3e-83 311.2 211 69.7
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-82 310.1 207 72.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 2.4e-82 309.3 213 66.7
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.4e-82 309.3 211 69.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.1e-82 308.9 207 72.0
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.1e-82 308.9 207 72.0
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.1e-82 308.9 211 70.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.4e-82 308.1 207 72.0
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.7e-81 305.8 211 69.2
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.5e-81 305.4 211 68.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 4.5e-81 305.1 211 68.2
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 4.5e-81 305.1 211 70.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 5.9e-81 304.7 211 68.2
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.0e-80 303.9 212 68.9
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.0e-80 303.9 212 68.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.5e-80 300.8 207 70.5
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.9e-79 299.7 268 57.5
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.2e-78 297.0 235 62.1
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 4.7e-78 295.0 209 67.0
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 6.1e-78 294.7 211 66.4
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-77 293.9 257 59.1
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.0e-77 293.9 219 64.8
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 4.0e-77 292.0 208 63.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 4.0e-77 292.0 208 64.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 5.2e-77 291.6 205 67.3
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.2e-76 290.4 208 65.4
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.0e-76 289.7 204 67.2
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.0e-76 289.7 204 67.2
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.6e-76 289.3 208 65.9
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 4.4e-76 288.5 208 63.0
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 7.5e-76 287.7 211 64.9
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.1e-74 283.9 204 64.7
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.0e-73 279.6 211 63.5
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.3e-72 276.9 211 62.1
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 8.9e-69 264.2 211 62.6
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.5e-68 263.5 168 76.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.9e-65 251.5 206 56.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-64 249.6 211 61.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.9e-64 248.8 211 59.7
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.0e-61 238.8 211 57.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.4e-58 229.6 290 42.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 4.6e-57 225.3 214 53.7
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 4.6e-57 225.3 214 53.7
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.6e-55 218.4 209 53.6
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 4.7e-54 215.3 208 55.3
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 5.2e-53 211.8 212 52.4
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.5e-47 193.0 211 46.9
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 8.9e-45 184.5 166 59.6
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-44 184.1 234 45.7
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-42 177.2 190 51.6
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 4.1e-42 175.6 207 42.0
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 2.3e-40 169.9 111 68.5
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.0e-40 169.5 110 72.7
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.6e-38 163.7 205 46.8
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.4e-37 159.8 110 69.1
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.0e-37 159.1 153 56.9
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 5.6e-31 138.7 165 41.2
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.2e-30 135.2 80 76.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 2.0e-28 130.2 160 43.1
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.2e-26 122.5 85 63.5
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.2e-26 122.5 112 58.9
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 5.3e-21 105.5 202 33.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.2e-19 100.1 190 32.1
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.3e-16 90.1 56 66.1
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 5.3e-13 79.0 186 29.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.9e-11 73.2 58 51.7
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.2e-09 67.8 43 62.8
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 2.8e-06 56.6 152 26.3


User provided reference genes

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