Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 2171.7 1110 100.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1465.3 1125 68.7
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1421.0 1107 70.3
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 0.0e+00 1371.7 1124 67.3
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1340.9 1131 64.0
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1315.8 1114 65.5
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 0.0e+00 1300.8 1033 67.6
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1292.3 1115 61.9
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1281.5 1152 63.4
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1248.8 1111 59.2
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1235.7 1112 60.3
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1235.3 1126 62.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1234.6 1117 61.4
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1219.5 1113 62.2
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1202.6 1172 58.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1167.5 1149 56.0
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1165.6 1114 57.5
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 0.0e+00 1143.6 1199 53.5
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 0.0e+00 1135.2 1178 54.6
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1134.0 1117 57.7
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1132.1 1118 57.9
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 1127.9 1205 56.1
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 0.0e+00 1122.1 1113 56.4
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1121.3 1139 57.3
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 0.0e+00 1118.2 1143 55.6
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1115.9 1140 57.9
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 0.0e+00 1114.4 1119 57.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1103.6 1113 57.4
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1093.6 968 60.5
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 0.0e+00 1093.2 1150 54.2
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1091.6 1047 59.5
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 0.0e+00 1091.3 1133 53.4
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 0.0e+00 1082.4 1136 54.0
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1078.2 968 59.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 3.8e-311 1071.6 1237 52.6
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 2.8e-309 1065.4 1116 53.3
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.3e-301 1040.0 1113 54.5
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 8.3e-301 1037.3 1105 52.5
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.1e-300 1036.9 1159 51.1
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 9.5e-297 1023.8 1117 54.2
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 3.6e-296 1021.9 1226 51.7
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.8e-295 1019.6 1222 50.2
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.0e-294 1016.1 1119 53.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.6e-294 1015.8 1262 48.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.7e-293 1013.1 1161 50.9
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.3e-289 998.8 1140 50.9
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.1e-288 996.1 1298 47.5
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 3.4e-286 988.8 1065 52.5
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 2.2e-285 986.1 1156 49.4
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 8.4e-285 984.2 1167 48.1
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.4e-284 981.5 1189 47.9
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.2e-283 980.3 1229 49.7
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 7.3e-281 971.1 1119 49.7
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 2.1e-280 969.5 1082 51.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.4e-279 966.8 1161 47.7
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.1e-279 965.7 1070 51.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.1e-276 957.2 1165 47.0
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.9e-276 956.4 1250 46.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.0e-275 951.4 1125 48.5
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.0e-274 950.7 1200 47.4
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 3.9e-274 948.7 1240 46.9
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 6.6e-274 948.0 1157 48.1
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.4e-271 939.5 1157 47.5
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.3e-271 938.3 890 56.3
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.3e-269 933.7 1119 48.9
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.1e-268 930.6 1108 47.5
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 9.3e-268 927.5 1113 49.8
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.2e-267 927.2 1119 47.1
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.1e-267 926.4 1178 46.8
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 6.6e-266 921.4 1116 49.5
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.5e-265 919.5 1159 46.9
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 9.6e-265 917.5 1219 46.8
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 6.2e-264 914.8 1136 49.6
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 6.2e-264 914.8 1136 49.6
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.5e-262 908.7 1161 48.5
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 9.9e-262 907.5 628 71.7
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 4.2e-260 902.1 1147 46.3
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.0e-258 897.5 1172 46.2
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 1.9e-257 893.3 1231 45.6
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.4e-255 887.1 1115 47.7
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 3.1e-255 885.9 1116 46.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 3.4e-254 882.5 1221 43.7
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.5e-251 872.5 1170 45.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 9.6e-249 864.4 1132 46.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 6.9e-247 858.2 1118 45.7
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.5e-246 857.1 1130 46.2
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.3e-245 854.0 1118 45.7
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.3e-245 854.0 1138 45.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 3.2e-244 849.4 1154 45.0
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 4.2e-244 849.0 1113 46.1
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.4e-234 817.4 1057 47.8
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.1e-234 815.5 1108 44.5
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 5.1e-234 815.5 618 66.7
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 7.9e-227 791.6 672 59.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 4.8e-224 782.3 991 46.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 6.3e-224 781.9 959 48.4
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.1e-220 771.2 1087 43.6
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.0e-218 764.6 890 50.2
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 3.5e-214 749.6 1063 45.5
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 3.2e-204 716.5 1131 43.1
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.5e-201 707.6 623 59.7
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 3.1e-199 699.9 765 50.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 7.0e-199 698.7 1063 41.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 3.8e-197 693.0 907 47.6
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-196 690.6 493 72.0
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.8e-194 684.1 638 59.4
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.3e-189 667.2 811 48.6
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.6e-182 644.4 636 54.2
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.5e-180 637.1 961 41.0
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.5e-177 627.9 766 48.7
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.3e-164 583.6 797 44.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.9e-154 549.3 412 68.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.7e-131 473.8 703 44.4
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 5.5e-127 459.9 948 37.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 7.2e-127 459.5 948 37.0
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.1e-116 425.6 328 64.9
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.7e-115 420.6 1071 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.9e-114 416.4 712 36.2
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 9.1e-114 416.0 642 39.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 5.0e-112 410.2 318 67.3
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.6e-105 387.9 807 35.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.2e-95 354.0 278 64.4
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.1e-94 351.7 589 41.4
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.0e-93 349.4 289 64.0
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.4e-85 322.4 253 63.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 4.4e-84 317.4 459 49.9
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.9e-67 261.5 403 36.5
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.8e-65 253.4 341 42.5
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 9.0e-37 160.2 287 36.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.9e-34 152.5 526 27.9
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.2e-26 125.2 276 32.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 7.9e-25 120.6 281 28.8
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 5.3e-13 81.3 117 41.9
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 4.5e-12 78.2 58 62.1
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 5.0e-11 74.7 276 28.6
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 2.7e-09 68.9 121 41.3
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 4.6e-09 68.2 135 37.0
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.8e-08 66.2 143 37.8
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 2.5e-07 62.4 45 66.7


User provided reference genes

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