Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34815 Davidia involucrata HOM05D003738 ORTHO05D005143 2.6e-58 228.4 109 100.0
GSVIVG01030948001 Vitis vinifera HOM05D003738 ORTHO05D005143 3.6e-55 218.0 109 94.5
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 6.1e-55 217.2 109 94.5
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 7.9e-55 216.9 109 94.5
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 1.8e-54 215.7 109 93.6
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 1.8e-54 215.7 109 93.6
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 3.9e-54 214.5 109 92.7
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 5.1e-54 214.2 109 92.7
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 5.1e-54 214.2 109 92.7
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 5.1e-54 214.2 109 92.7
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 6.7e-54 213.8 109 92.7
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 8.8e-54 213.4 109 92.7
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 1.1e-53 213.0 109 93.6
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.0e-53 212.2 109 90.8
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.0e-53 212.2 109 90.8
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 3.3e-53 211.5 109 91.7
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 5.7e-53 210.7 109 89.9
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 7.4e-53 210.3 109 90.8
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 7.4e-53 210.3 109 90.8
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 9.7e-53 209.9 109 90.8
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.7e-52 209.1 109 89.9
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 1.7e-52 209.1 109 91.7
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.7e-52 209.1 109 89.9
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 2.2e-52 208.8 109 90.8
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 2.8e-52 208.4 109 90.8
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 6.3e-52 207.2 109 89.0
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 6.3e-52 207.2 108 89.8
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 6.3e-52 207.2 109 90.8
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 8.2e-52 206.8 109 89.0
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 8.2e-52 206.8 109 89.9
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 1.4e-51 206.1 109 88.1
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 1.4e-51 206.1 109 88.1
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 1.8e-51 205.7 109 88.1
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 1.8e-51 205.7 109 89.9
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 1.8e-51 205.7 109 89.9
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 2.4e-51 205.3 109 89.0
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 2.4e-51 205.3 109 88.1
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 3.1e-51 204.9 109 88.1
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 4.1e-51 204.5 105 89.5
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 5.3e-51 204.1 109 89.0
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 6.9e-51 203.8 109 87.2
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 9.1e-51 203.4 109 86.2
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 1.2e-50 203.0 109 87.2
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 1.5e-50 202.6 109 86.2
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 2.0e-50 202.2 109 87.2
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 2.6e-50 201.8 109 86.2
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 2.6e-50 201.8 109 88.1
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 2.6e-50 201.8 109 86.2
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 3.4e-50 201.4 109 86.2
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 3.4e-50 201.4 109 86.2
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 4.5e-50 201.1 109 86.2
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 5.9e-50 200.7 109 86.2
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 5.9e-50 200.7 109 85.3
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 7.7e-50 200.3 109 85.3
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 7.7e-50 200.3 105 89.5
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 7.7e-50 200.3 109 89.0
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 1.3e-49 199.5 106 86.8
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 1.7e-49 199.1 108 86.1
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 2.2e-49 198.7 109 85.3
Ciclev10013371m.g Citrus clementina HOM05D003738 ORTHO05D005143 2.9e-49 198.4 105 88.6
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 3.8e-49 198.0 109 84.4
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 5.0e-49 197.6 109 85.3
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 6.5e-49 197.2 109 84.4
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 6.5e-49 197.2 109 84.4
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 1.1e-48 196.4 109 82.6
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.4e-48 196.1 109 84.4
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.9e-48 195.7 109 82.6
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 1.9e-48 195.7 109 83.5
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 1.9e-48 195.7 109 82.6
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 2.5e-48 195.3 109 82.6
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 3.2e-48 194.9 109 83.5
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 3.2e-48 194.9 109 82.6
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 3.2e-48 194.9 109 82.6
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 3.2e-48 194.9 109 82.6
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 3.2e-48 194.9 109 84.4
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 5.5e-48 194.1 109 82.6
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 5.5e-48 194.1 109 82.6
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 5.5e-48 194.1 109 83.5
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 7.2e-48 193.7 109 82.6
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 7.2e-48 193.7 109 83.5
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 7.2e-48 193.7 109 83.5
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 7.2e-48 193.7 109 83.5
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 9.4e-48 193.4 109 81.7
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 9.4e-48 193.4 109 80.7
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 1.2e-47 193.0 109 81.7
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 1.2e-47 193.0 109 81.7
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.2e-47 193.0 109 81.7
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 1.2e-47 193.0 109 81.7
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 1.6e-47 192.6 109 82.6
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 2.1e-47 192.2 107 82.2
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 2.7e-47 191.8 109 80.7
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 2.7e-47 191.8 109 80.7
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 3.6e-47 191.4 109 81.7
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 3.6e-47 191.4 109 81.7
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 4.7e-47 191.0 109 81.7
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 6.1e-47 190.7 109 82.6
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 6.1e-47 190.7 109 82.6
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 8.0e-47 190.3 109 82.6
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.0e-46 189.9 109 81.7
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 1.0e-46 189.9 109 80.7
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 1.0e-46 189.9 109 82.6
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.4e-46 189.5 109 78.9
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 1.8e-46 189.1 109 81.7
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 3.0e-46 188.3 109 80.7
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 6.7e-46 187.2 109 78.0
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 8.8e-46 186.8 105 83.8
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.1e-45 186.4 105 83.8
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 5.7e-45 184.1 109 78.9
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.3e-44 183.0 107 80.4
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 2.8e-44 181.8 109 75.2
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 3.7e-44 181.4 109 77.1
GSVIVG01013575001 Vitis vinifera HOM05D003738 ORTHO05D005143 5.9e-42 174.1 91 90.1
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 5.5e-40 167.5 94 83.0
Duzib114G0391 Durio zibethinus HOM05D003738 ORTHO05D005143 2.1e-39 165.6 102 77.5
RhsimUnG0182900 Rhododendron simsii HOM05D003738 ORTHO05D005143 8.8e-38 160.2 105 72.4
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 4.4e-37 157.9 108 67.6
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.3e-36 156.4 83 86.7
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 1.7e-36 156.0 74 98.6
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 5.9e-34 147.5 85 83.5
arahy.Tifrunner.gnm1.ann1.3J26XN Arachis hypogaea HOM05D003738 ORTHO05D005143 8.8e-30 133.7 97 64.9
CBR_g39224 Chara braunii HOM05D003738 ORTHO05D005143 3.4e-29 131.7 106 57.5
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 3.7e-28 128.3 107 58.9
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.0e-26 122.5 78 75.6
arahy.Tifrunner.gnm1.ann1.TLT49F Arachis hypogaea HOM05D003738 ORTHO05D005143 2.7e-26 122.1 81 67.9
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.7e-26 120.6 62 88.7
HanXRQChr02g0040721 Helianthus annuus HOM05D003738 ORTHO05D005143 3.8e-25 118.2 63 84.1
arahy.Tifrunner.gnm1.ann1.S5LGPQ Arachis hypogaea HOM05D003738 ORTHO05D005143 6.5e-25 117.5 85 68.2
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 6.5e-25 117.5 78 70.5
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 2.6e-21 105.5 77 66.2
arahy.Tifrunner.gnm1.ann1.85I739 Arachis hypogaea HOM05D003738 ORTHO05D005143 9.8e-21 103.6 73 65.8
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-19 100.1 71 66.2
arahy.Tifrunner.gnm1.ann1.EHW2CP Arachis hypogaea HOM05D003738 ORTHO05D005143 1.6e-18 96.3 65 70.8
arahy.Tifrunner.gnm1.ann1.E0ZWVI Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-17 92.8 69 60.9
arahy.Tifrunner.gnm1.ann1.L98BBS Arachis hypogaea HOM05D003738 ORTHO05D005143 2.5e-16 89.0 66 65.2
PRCOL_00004783 Prasinoderma coloniale HOM05D003738 ORTHO05D005143 7.3e-16 87.4 119 42.9
Rhsim10G0076500 Rhododendron simsii HOM05D003738 ORTHO05D011435 1.4e-14 83.2 107 46.7
Rhsim10G0073600 Rhododendron simsii HOM05D003738 ORTHO05D000007 1.5e-13 79.7 89 50.6
Cpa.g.sc59.42 Carica papaya HOM05D003738 ORTHO05D005143 5.8e-13 77.8 47 78.7
arahy.Tifrunner.gnm1.ann1.N2UQDL Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-11 73.6 48 68.8
arahy.Tifrunner.gnm1.ann1.YP6RFP Arachis hypogaea HOM05D003738 ORTHO05D005143 2.4e-11 72.4 55 63.6
arahy.Tifrunner.gnm1.ann1.JT11CY Arachis hypogaea HOM05D003738 ORTHO05D023727 5.4e-11 71.2 47 72.3
arahy.Tifrunner.gnm1.ann1.P0BYU6 Arachis hypogaea HOM05D003738 ORTHO05D005143 7.0e-11 70.9 46 67.4
arahy.Tifrunner.gnm1.ann1.996DKV Arachis hypogaea HOM05D003738 ORTHO05D005143 6.0e-10 67.8 44 65.9
arahy.Tifrunner.gnm1.ann1.31213D Arachis hypogaea HOM05D003738 ORTHO05D005143 5.0e-09 64.7 45 64.4
arahy.Tifrunner.gnm1.ann1.PVN2ZV Arachis hypogaea HOM05D003738 ORTHO05D021496 3.3e-08 62.0 37 67.6
arahy.Tifrunner.gnm1.ann1.AT2XXE Arachis hypogaea HOM05D003738 ORTHO05D005143 7.3e-08 60.8 73 46.6
arahy.Tifrunner.gnm1.ann1.ZEW0UV Arachis hypogaea HOM05D003738 ORTHO05D005143 9.5e-08 60.5 40 72.5
arahy.Tifrunner.gnm1.ann1.95JV46 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.2e-07 60.1 52 51.9


User provided reference genes

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