Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 7.1e-113 410.6 207 100.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.4e-89 333.2 185 89.2
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.5e-89 332.4 184 89.1
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 5.5e-89 331.3 185 89.2
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.6e-88 329.7 185 88.6
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.3e-87 325.9 185 86.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 3.9e-87 325.1 185 85.9
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 6.7e-87 324.3 185 86.5
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.9e-86 322.8 185 86.5
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.5e-86 322.4 185 85.9
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 3.3e-86 322.0 185 87.0
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 4.3e-86 321.6 185 86.5
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.3e-86 321.6 185 87.6
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 7.4e-86 320.9 185 84.9
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.3e-85 320.1 185 85.9
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.3e-85 320.1 185 85.4
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-85 319.7 186 86.0
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.7e-85 319.7 185 84.3
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.7e-85 319.7 185 84.3
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.2e-85 319.3 185 86.5
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.2e-85 319.3 186 86.0
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.2e-85 319.3 186 86.0
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.8e-85 318.2 183 85.8
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 8.2e-85 317.4 185 85.4
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.1e-84 317.0 185 85.4
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.4e-84 316.6 185 83.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.4e-84 316.6 186 86.0
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.8e-84 316.2 185 83.2
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 2.4e-84 315.8 185 84.9
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.4e-84 315.8 185 84.3
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 4.1e-84 315.1 182 85.7
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 5.3e-84 314.7 185 83.2
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 6.9e-84 314.3 185 83.2
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 9.1e-84 313.9 185 84.3
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.2e-83 313.5 185 82.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 2.6e-83 312.4 185 84.9
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 7.7e-83 310.8 186 83.9
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.0e-82 310.5 186 83.9
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.3e-82 310.1 186 83.9
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.8e-82 308.5 185 84.9
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 5.0e-82 308.1 187 81.8
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 5.0e-82 308.1 185 80.5
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 5.0e-82 308.1 185 82.7
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 8.5e-82 307.4 185 82.7
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.4e-81 306.6 186 81.7
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.4e-81 306.6 185 81.6
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 3.2e-81 305.4 190 81.1
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 4.2e-81 305.1 189 83.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.2e-81 305.1 185 81.6
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 2.1e-80 302.8 194 79.4
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.7e-80 301.6 184 82.1
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.7e-80 301.6 185 80.0
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 6.1e-80 301.2 182 81.9
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 7.9e-80 300.8 186 79.6
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.0e-79 300.4 186 79.6
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.3e-79 299.3 185 81.1
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 3.0e-79 298.9 186 79.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 3.9e-79 298.5 189 82.0
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 5.1e-79 298.1 189 82.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.5e-78 296.6 188 80.9
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 3.3e-78 295.4 188 81.4
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 9.7e-78 293.9 187 76.5
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.3e-77 293.5 187 80.7
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 2.8e-77 292.4 185 76.8
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.8e-77 292.4 188 79.8
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 6.3e-77 291.2 232 68.5
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 8.2e-77 290.8 189 78.8
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.4e-76 290.0 188 78.7
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.4e-76 290.0 188 78.7
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.4e-76 289.3 189 75.1
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 3.1e-76 288.9 189 75.1
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 6.9e-76 287.7 188 78.7
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.2e-75 287.0 186 76.3
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 1.2e-75 287.0 189 75.1
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.0e-75 286.2 189 75.1
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.6e-75 285.8 185 76.8
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.6e-75 285.8 189 75.1
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.0e-74 283.9 185 74.6
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.7e-74 283.1 186 75.8
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.7e-74 283.1 186 75.8
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.7e-74 283.1 186 74.7
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 2.2e-74 282.7 186 74.7
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 3.8e-74 282.0 189 77.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 2.1e-72 276.2 175 76.6
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.7e-72 275.8 189 73.0
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.7e-72 275.8 188 73.9
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 3.6e-72 275.4 187 78.1
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 8.0e-72 274.2 184 73.9
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 5.2e-71 271.6 177 76.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 5.2e-71 271.6 205 68.8
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 5.2e-71 271.6 205 68.8
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 8.8e-71 270.8 189 76.2
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-70 270.0 205 68.3
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 5.7e-70 268.1 177 76.8
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 6.3e-69 264.6 167 76.0
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.6e-67 259.2 185 67.6
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 1.7e-66 256.5 185 67.6
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 8.5e-66 254.2 166 75.3
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.2e-65 252.3 186 70.4
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 4.8e-61 238.4 156 76.9
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.0e-58 230.7 232 57.8
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-54 217.2 187 64.2
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 9.1e-52 207.6 185 57.8
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.2e-51 207.2 108 89.8
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.3e-50 203.0 106 90.6
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.9e-50 202.6 185 62.2
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.6e-48 195.7 185 56.2
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.5e-46 190.3 185 54.6
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 3.7e-45 185.7 187 50.3
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.2e-43 180.6 128 69.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.2e-40 170.6 94 84.0
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 4.7e-40 168.7 125 68.0
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 8.9e-39 164.5 92 82.6
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 1.1e-33 147.5 98 76.5
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.6e-30 136.3 105 61.0
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.5e-27 125.9 78 82.1
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 4.3e-25 119.0 108 59.3
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.8e-24 116.3 62 90.3
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.6e-24 115.9 107 56.1
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 4.9e-21 105.5 84 63.1
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 6.0e-19 98.6 68 66.2
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 7.3e-17 91.7 52 84.6
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 1.2e-16 90.9 184 35.9
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 2.0e-14 83.6 67 65.7
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 2.3e-10 70.1 46 87.0
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 1.9e-09 67.0 35 80.0
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 6.2e-08 62.0 46 73.9
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 3.4e-06 56.2 48 62.5


User provided reference genes

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