Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.7e-53 212.6 124 100.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.6e-19 99.8 97 70.1
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 4.4e-17 91.7 93 59.1
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.2e-13 79.3 49 83.7
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 2.9e-13 79.0 49 81.6
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 6.5e-13 77.8 44 90.9
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 6.5e-13 77.8 49 79.6
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 6.5e-13 77.8 49 79.6
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 6.5e-13 77.8 49 79.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 6.5e-13 77.8 49 79.6
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 8.5e-13 77.4 49 83.7
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.5e-12 76.6 49 79.6
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.9e-12 76.3 49 79.6
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.5e-12 75.9 42 92.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.5e-12 75.9 49 77.6
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.5e-12 75.9 87 62.1
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.2e-12 75.5 88 52.3
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 3.2e-12 75.5 43 90.7
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 4.2e-12 75.1 49 77.6
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 5.5e-12 74.7 91 67.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 7.2e-12 74.3 49 77.6
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 9.4e-12 73.9 41 92.7
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 9.4e-12 73.9 49 75.5
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.6e-11 73.2 42 88.1
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.6e-11 73.2 43 86.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.6e-11 73.2 49 73.5
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.6e-11 73.2 49 73.5
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.6e-11 73.2 49 77.6
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 77.6
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 77.6
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 77.6
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 77.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 75.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.1e-11 72.8 49 73.5
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.7e-11 72.4 90 51.1
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 2.7e-11 72.4 46 80.4
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 3.6e-11 72.0 49 73.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 3.6e-11 72.0 49 77.6
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.6e-11 72.0 49 71.4
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 8.0e-11 70.9 49 75.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.0e-10 70.5 49 71.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.0e-10 70.5 49 73.5
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.0e-10 70.5 49 73.5
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.0e-10 70.5 49 73.5
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.0e-10 70.5 43 79.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.4e-10 70.1 49 69.4
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.0e-10 68.6 41 82.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 8.8e-10 67.4 43 74.4
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.2e-09 67.0 41 82.9
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.5e-09 66.6 42 76.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.5e-09 66.6 90 44.4
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.6e-09 65.9 49 69.4
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.4e-09 65.5 50 68.0
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.4e-09 65.5 40 80.0
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.4e-09 65.5 40 82.5
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 9.8e-09 63.9 38 86.8
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 9.8e-09 63.9 41 78.0
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.8e-09 63.9 88 47.7
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 9.8e-09 63.9 39 79.5
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 9.8e-09 63.9 41 78.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.7e-08 63.2 41 75.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.8e-08 62.4 50 64.0
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-08 62.4 43 69.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.9e-08 61.6 99 43.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.9e-08 61.6 49 61.2
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 4.9e-08 61.6 40 75.0
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.3e-08 61.2 43 65.1
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.3e-08 61.2 43 65.1
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 8.3e-08 60.8 85 48.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.1e-07 60.5 40 67.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-07 60.1 91 59.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.4e-07 60.1 49 61.2
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 1.8e-07 59.7 45 68.9
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.1e-07 58.9 40 72.5
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.1e-07 58.5 41 68.3
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 7.0e-07 57.8 40 70.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 7.0e-07 57.8 41 65.9
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 9.2e-07 57.4 44 65.9
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.6e-06 56.6 36 69.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.0e-06 56.2 85 47.1
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 2.0e-06 56.2 70 48.6
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 4.5e-06 55.1 35 68.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 7.7e-06 54.3 34 76.5


User provided reference genes

Program Settings