Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 5.4e-164 580.9 281 100.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.3e-136 490.0 265 87.9
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.7e-133 479.6 265 87.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.2e-133 479.2 263 86.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 4.2e-132 474.9 263 86.7
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-131 473.4 263 85.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.3e-130 469.2 262 84.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 7.4e-129 464.2 263 84.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.6e-129 463.8 270 82.2
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 4.8e-128 461.5 263 82.9
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.8e-128 461.5 263 82.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.4e-127 459.1 263 83.3
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 3.1e-127 458.8 263 81.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 3.1e-127 458.8 263 82.1
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.9e-127 457.6 262 83.6
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.5e-126 456.4 263 83.3
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.8e-126 454.5 263 82.1
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 7.6e-126 454.1 263 81.0
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.3e-125 453.4 308 74.7
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.7e-125 453.0 263 81.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.7e-125 453.0 263 82.9
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.9e-125 452.2 263 82.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.9e-125 452.2 262 82.8
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.8e-125 451.8 263 80.2
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.4e-124 449.9 265 79.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.9e-124 449.5 264 81.8
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.9e-124 449.5 263 80.6
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 3.2e-124 448.7 263 79.5
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.2e-124 448.7 263 80.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.2e-124 448.7 263 79.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 7.1e-124 447.6 264 79.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.6e-123 446.4 263 81.4
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.6e-123 446.4 263 78.3
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.5e-123 445.3 264 80.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 3.5e-123 445.3 263 79.1
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 7.9e-123 444.1 266 80.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-122 443.7 263 79.5
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-122 443.7 263 79.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.3e-122 443.4 264 77.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.8e-122 443.0 263 79.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.8e-122 443.0 263 79.8
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.3e-122 442.6 263 81.4
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.0e-122 442.2 263 80.2
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.9e-122 441.8 263 78.7
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.9e-122 441.8 263 79.8
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 5.1e-122 441.4 264 78.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.1e-122 441.4 263 79.5
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 8.7e-122 440.7 263 78.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 8.7e-122 440.7 263 79.1
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.5e-121 439.9 263 79.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.5e-121 439.1 263 80.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.3e-121 438.3 263 78.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.3e-121 438.3 263 80.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.3e-121 438.3 263 78.3
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.6e-121 438.0 266 77.4
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.6e-121 438.0 263 78.3
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 7.4e-121 437.6 263 79.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.4e-121 437.6 263 79.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 9.6e-121 437.2 262 77.1
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-120 436.8 263 78.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.6e-120 436.4 264 76.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.6e-120 436.4 264 76.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.1e-120 436.0 264 76.9
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.8e-120 435.6 264 76.9
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.8e-120 435.6 264 76.9
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.8e-120 435.6 264 76.9
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.8e-120 435.6 263 78.3
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 3.7e-120 435.3 263 78.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.7e-120 435.3 264 77.7
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 4.8e-120 434.9 263 78.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 6.2e-120 434.5 263 79.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 6.2e-120 434.5 263 77.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 8.2e-120 434.1 263 77.9
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.4e-119 433.3 263 77.9
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.4e-119 432.6 263 77.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.1e-119 432.2 264 77.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.1e-119 432.2 263 77.9
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 4.0e-119 431.8 292 72.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 6.9e-119 431.0 264 76.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 9.0e-119 430.6 263 78.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.5e-118 429.9 264 76.5
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.0e-118 429.5 263 77.6
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.0e-118 429.5 263 77.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 3.4e-118 428.7 267 78.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.4e-118 428.7 263 77.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 4.5e-118 428.3 265 77.4
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 5.8e-118 427.9 249 83.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 7.6e-118 427.6 266 77.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.2e-117 426.0 263 74.9
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.8e-117 425.2 263 74.9
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 4.9e-117 424.9 263 74.9
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.4e-116 423.3 263 74.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.6e-115 418.3 242 81.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.0e-115 417.9 263 76.4
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.9e-113 412.9 263 72.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.6e-112 409.8 243 81.1
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.2e-112 407.5 262 72.1
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.2e-112 407.5 264 72.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 4.1e-111 405.2 264 73.5
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 9.0e-111 404.1 263 75.3
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.0e-110 402.9 242 79.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.4e-110 402.1 276 72.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 5.9e-110 401.4 264 73.1
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.2e-109 399.4 262 72.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.5e-109 397.9 262 72.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 6.5e-109 397.9 267 71.9
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.4e-108 396.7 267 71.9
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.2e-108 394.4 249 76.7
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 3.6e-107 392.1 264 69.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 6.7e-106 387.9 280 71.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.3e-105 385.6 242 76.0
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 7.4e-105 384.4 226 81.4
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.7e-105 384.0 259 66.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 9.7e-105 384.0 232 80.6
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.7e-104 382.1 265 68.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.8e-101 372.1 263 70.7
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.5e-100 369.4 244 73.4
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 4.2e-100 368.6 286 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 7.2e-100 367.9 263 66.2
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 4.6e-99 365.2 242 72.3
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.3e-96 357.1 221 76.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.8e-96 355.9 218 78.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.4e-95 353.6 241 71.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.8e-95 353.2 268 62.7
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.2e-92 341.3 323 55.7
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.6e-91 340.1 265 61.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 6.5e-77 291.6 172 77.9
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.0e-74 282.7 258 55.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 8.8e-74 281.2 263 56.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.8e-73 277.7 183 71.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.2e-72 276.6 182 67.0
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.6e-67 260.4 167 74.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.6e-67 260.4 257 50.6
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.7e-64 250.4 180 64.4
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.7e-56 223.8 247 50.2
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-56 223.4 130 80.0
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.1e-55 221.1 139 72.7
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 3.6e-43 179.5 100 85.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.3e-36 156.4 111 70.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.0e-33 147.1 171 52.0
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.0e-26 122.9 63 88.9
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-24 117.1 64 81.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 3.2e-23 113.2 74 64.9
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.2e-23 112.8 76 72.4
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.2e-23 112.8 66 77.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.3e-16 91.3 55 78.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.9e-13 79.7 46 82.6
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.1e-12 78.2 74 55.4
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.4e-10 70.5 41 73.2
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 3.4e-09 66.6 83 45.8
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 3.8e-08 63.2 146 26.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.5e-07 59.3 131 27.5


User provided reference genes

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