Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29460 Davidia involucrata HOM05D003901 ORTHO05D004511 6.7e-159 564.3 279 100.0
Actinidia24200 Actinidia chinensis HOM05D003901 ORTHO05D004511 5.4e-108 395.2 248 82.3
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 3.5e-107 392.5 250 81.2
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 1.3e-106 390.6 242 82.6
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.7e-106 390.2 249 81.1
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 1.1e-105 387.5 242 82.6
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 9.5e-105 384.4 224 86.6
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.2e-104 384.0 230 83.9
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 4.7e-104 382.1 245 80.4
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 8.1e-104 381.3 226 86.7
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 3.1e-103 379.4 250 78.8
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 8.9e-103 377.9 242 81.8
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 8.9e-103 377.9 249 78.7
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 1.2e-102 377.5 233 82.8
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 1.2e-102 377.5 232 82.3
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.5e-102 377.1 248 77.8
Lj2C981T10 Lonicera japonica HOM05D003901 ORTHO05D004511 2.0e-102 376.7 252 79.4
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 2.6e-102 376.3 254 77.2
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 2.6e-102 376.3 244 78.7
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 2.6e-102 376.3 249 78.3
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.4e-102 375.9 248 77.4
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 4.4e-102 375.6 218 86.7
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 7.5e-102 374.8 235 80.0
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 7.5e-102 374.8 241 80.1
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 7.5e-102 374.8 231 83.1
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 9.8e-102 374.4 232 82.8
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 9.8e-102 374.4 248 77.4
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 9.8e-102 374.4 248 77.4
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 9.8e-102 374.4 246 78.5
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.3e-101 374.0 233 82.4
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 1.7e-101 373.6 218 85.8
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.2e-101 373.2 231 83.1
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 2.2e-101 373.2 226 84.5
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 2.2e-101 373.2 241 80.1
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 2.9e-101 372.9 243 79.8
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 2.9e-101 372.9 251 78.5
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 3.7e-101 372.5 238 80.7
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 4.9e-101 372.1 248 77.0
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 8.3e-101 371.3 250 76.4
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.9e-100 370.2 226 84.5
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 2.4e-100 369.8 273 71.1
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 2.4e-100 369.8 248 75.8
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 7.1e-100 368.2 251 76.1
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 1.6e-99 367.1 225 84.0
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 2.1e-99 366.7 248 77.0
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 2.1e-99 366.7 244 78.7
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 4.6e-99 365.5 250 75.2
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.0e-98 364.4 244 78.3
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 1.3e-98 364.0 248 76.6
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 1.3e-98 364.0 248 76.6
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 1.7e-98 363.6 248 76.6
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 2.3e-98 363.2 212 85.8
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 2.3e-98 363.2 217 82.9
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 2.3e-98 363.2 217 82.9
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 5.1e-98 362.1 279 69.5
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 1.1e-97 360.9 250 73.6
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.5e-97 360.5 252 73.4
TPR.G23813 Trifolium pratense HOM05D003901 ORTHO05D004511 1.5e-97 360.5 248 75.4
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 1.9e-97 360.1 278 70.9
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 2.5e-97 359.8 248 75.0
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 3.3e-97 359.4 247 75.7
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 3.3e-97 359.4 243 77.0
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 4.3e-97 359.0 217 81.6
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 5.6e-97 358.6 250 76.0
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 5.6e-97 358.6 257 71.6
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 5.6e-97 358.6 240 78.3
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 7.3e-97 358.2 227 82.4
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 7.3e-97 358.2 250 73.6
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 9.5e-97 357.8 232 79.3
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 9.5e-97 357.8 217 82.5
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 9.5e-97 357.8 233 80.3
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.2e-96 357.5 233 80.3
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 1.2e-96 357.5 218 82.1
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 1.6e-96 357.1 213 84.0
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 1.6e-96 357.1 200 88.5
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 4.7e-96 355.5 243 75.7
SalBow6G4040 Salvia bowleyana HOM05D003901 ORTHO05D004511 6.2e-96 355.1 237 77.2
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 8.1e-96 354.8 222 79.7
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 3.1e-95 352.8 247 72.9
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 3.1e-95 352.8 250 74.4
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 3.1e-95 352.8 247 74.1
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 4.0e-95 352.4 219 81.7
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 6.8e-95 351.7 227 78.4
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 8.9e-95 351.3 261 71.6
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 2.0e-94 350.1 222 79.3
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 4.4e-94 349.0 229 77.7
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 4.4e-94 349.0 229 77.7
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 4.4e-94 349.0 222 82.0
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 7.6e-94 348.2 227 80.2
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 2.2e-93 346.7 207 83.1
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 2.9e-93 346.3 200 87.0
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.1e-92 344.4 208 79.8
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 1.1e-92 344.4 250 73.2
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 1.6e-91 340.5 218 78.9
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 2.7e-91 339.7 216 79.6
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 3.5e-91 339.3 201 83.6
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 1.0e-90 337.8 233 74.2
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 1.0e-90 337.8 233 74.2
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 1.0e-90 337.8 233 74.2
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 1.0e-90 337.8 233 74.2
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 1.0e-90 337.8 233 74.2
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 1.0e-90 337.8 231 74.5
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 1.3e-90 337.4 231 74.9
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 1.3e-90 337.4 215 80.9
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.7e-90 337.0 208 79.3
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 2.3e-90 336.7 201 83.1
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 3.9e-90 335.9 241 73.9
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 6.6e-90 335.1 233 74.2
Actinidia37329 Actinidia chinensis HOM05D003901 ORTHO05D004511 8.6e-90 334.7 245 73.9
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 1.6e-88 330.5 215 78.1
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 2.8e-88 329.7 228 73.7
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 3.1e-87 326.2 220 74.1
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 2.6e-86 323.2 248 68.1
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 9.9e-86 321.2 253 69.6
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 3.2e-84 316.2 206 75.7
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 2.3e-82 310.1 216 74.1
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 2.5e-81 306.6 216 72.7
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 2.1e-80 303.5 256 64.1
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 9.0e-79 298.1 229 70.3
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 5.4e-76 288.9 178 82.6
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 5.4e-76 288.9 178 82.6
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.0e-74 284.6 168 86.9
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 9.9e-70 268.1 168 80.4
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 2.4e-68 263.5 180 77.2
Cpa.g.c36505.3 Carica papaya HOM05D003901 ORTHO05D004511 4.9e-61 239.2 130 87.7
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 3.2e-60 236.5 233 57.1
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 4.8e-56 222.6 122 89.3
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 4.1e-55 219.5 138 81.2
Sp5g16710 Schrenkiella parvula HOM05D003901 ORTHO05D004511 2.6e-54 216.9 234 53.0
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 4.6e-51 206.1 153 68.6
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 2.3e-50 203.8 210 50.5
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.9e-49 200.7 207 52.7
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 9.7e-49 198.4 106 90.6
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 2.2e-48 197.2 214 50.9
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.8e-48 196.1 214 50.9
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.4e-47 194.5 122 81.1
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 1.7e-45 187.6 202 49.5
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 1.1e-44 184.9 191 56.5
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 2.3e-42 177.2 208 49.5
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 3.7e-40 169.9 212 46.2
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 1.4e-39 167.9 98 84.7
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 8.5e-37 158.7 162 56.2
Oeu058252.1 Olea europaea HOM05D003901 ORTHO05D004511 8.8e-34 148.7 108 74.1
Oeu038979.1 Olea europaea HOM05D003901 ORTHO05D004511 1.5e-33 147.9 112 69.6
Sabra09G0112400 Salix brachista HOM05D000477 ORTHO05D000338 8.0e-27 125.6 110 62.7
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 5.2e-26 122.9 98 63.3
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 2.4e-23 114.0 206 38.8
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 2.4e-23 114.0 206 38.8
Prupe.8G049500 Prunus persica HOM05D003901 ORTHO05D004511 2.4e-23 114.0 83 72.3
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.6e-22 111.3 243 32.9
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.1e-20 105.1 207 34.8
FAN25G0964 Fragaria x ananassa HOM05D003901 ORTHO05D004511 7.5e-17 92.4 70 67.1
Cpa.g.sc32.110 Carica papaya HOM05D000796 ORTHO05D004511 2.2e-16 90.9 70 71.4
Manes.11G160250 Manihot esculenta HOM05D003901 ORTHO05D004511 6.5e-13 79.3 53 77.4
Dinv20131 Davidia involucrata HOM05D000041 ORTHO05D014616 6.8e-10 69.3 39 87.2


User provided reference genes

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