Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 8.9e-153 544.3 447 100.0
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.6e-107 392.1 347 70.3
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.4e-104 382.9 354 79.7
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.9e-103 379.8 371 71.2
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.8e-100 370.5 356 75.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.1e-97 361.3 352 72.7
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.8e-97 360.5 307 74.3
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.4e-97 360.1 356 64.9
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.5e-96 357.5 354 68.1
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.5e-96 357.5 353 72.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.0e-95 354.8 374 68.7
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.9e-95 353.2 353 68.0
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.0e-95 352.4 352 66.8
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.5e-94 349.0 337 61.1
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 2.1e-93 347.1 372 69.1
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 6.7e-92 342.0 370 66.2
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 8.8e-92 341.7 354 65.0
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.1e-91 341.3 363 63.1
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.0e-91 340.5 375 62.1
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 9.7e-91 338.2 353 73.4
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.2e-90 337.0 348 64.9
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.1e-89 334.7 369 69.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.4e-89 334.3 356 59.0
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 5.3e-89 332.4 355 65.4
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.5e-88 330.9 356 66.9
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 7.7e-88 328.6 366 62.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 7.7e-88 328.6 366 64.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.7e-87 327.4 349 68.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.2e-87 327.0 350 71.1
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 3.8e-87 326.2 364 68.7
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.1e-86 324.7 375 61.6
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.9e-86 323.9 371 65.0
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.2e-86 323.2 356 55.1
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 4.2e-86 322.8 375 64.3
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.2e-85 321.2 375 69.1
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 7.9e-85 318.5 366 59.0
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 3.9e-84 316.2 363 69.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 3.3e-83 313.2 369 70.2
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 9.7e-83 311.6 352 54.8
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 2.8e-82 310.1 350 60.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 2.8e-82 310.1 263 74.9
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 4.8e-82 309.3 370 71.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 4.8e-82 309.3 350 63.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.4e-81 307.8 381 62.5
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.1e-81 306.6 360 62.5
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 3.1e-81 306.6 357 57.4
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.1e-81 306.6 362 55.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 4.1e-81 306.2 358 55.6
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.2e-80 304.7 376 61.2
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 4.5e-80 302.8 379 59.9
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.7e-79 300.8 348 64.1
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.7e-79 300.8 382 63.4
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.9e-79 300.1 383 59.5
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.9e-79 300.1 322 71.4
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 5.0e-79 299.3 350 55.4
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 8.5e-79 298.5 349 59.9
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.9e-78 297.4 371 63.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 3.2e-78 296.6 357 72.8
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 4.2e-78 296.2 346 56.9
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.5e-78 295.8 371 62.5
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.2e-77 294.7 413 53.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-77 294.3 348 59.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.6e-77 294.3 348 59.8
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 2.1e-77 293.9 342 64.9
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 2.7e-77 293.5 349 56.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.1e-77 292.4 356 66.3
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 8.0e-77 292.0 407 60.7
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.8e-76 290.8 366 59.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.8e-76 290.8 388 62.1
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.3e-76 290.4 369 56.6
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.0e-76 290.0 365 60.5
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 3.0e-76 290.0 364 56.3
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.9e-76 289.7 356 66.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 6.7e-76 288.9 349 57.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 6.7e-76 288.9 356 57.9
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 6.7e-76 288.9 352 58.8
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 5.7e-75 285.8 346 62.4
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.3e-74 284.6 356 64.6
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.3e-74 284.6 368 64.4
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 6.3e-74 282.3 360 63.9
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.4e-73 281.2 380 65.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.8e-73 280.8 265 68.3
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.8e-73 280.8 376 63.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 2.4e-73 280.4 341 58.9
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 3.1e-73 280.0 350 57.1
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 3.1e-73 280.0 347 57.9
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 4.1e-73 279.6 316 61.4
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 9.1e-73 278.5 344 63.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.1e-73 278.5 269 63.2
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.2e-72 278.1 350 58.0
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.2e-72 278.1 376 61.4
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 2.0e-72 277.3 360 57.8
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 7.7e-72 275.4 373 63.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 7.7e-72 275.4 349 57.0
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 7.7e-72 275.4 350 57.7
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.0e-71 275.0 361 67.3
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.0e-71 275.0 361 67.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 6.5e-71 272.3 373 63.0
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 8.5e-71 271.9 362 63.5
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 4.2e-70 269.6 357 47.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 5.5e-70 269.2 405 59.5
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.6e-69 267.7 336 61.0
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.7e-69 266.9 334 62.3
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 6.1e-69 265.8 402 58.0
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 9.7e-67 258.5 165 75.8
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-66 258.1 371 60.6
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.3e-66 258.1 371 60.6
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 1.7e-66 257.7 262 69.5
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.2e-66 257.3 348 62.4
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.7e-66 256.5 329 60.2
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.7e-66 256.5 370 64.6
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.8e-65 254.2 372 63.4
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 3.1e-65 253.4 302 59.6
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.1e-65 253.4 375 63.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 4.1e-65 253.1 389 51.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.1e-65 253.1 374 63.6
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 5.3e-65 252.7 224 68.3
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.6e-64 251.1 349 56.7
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 7.7e-64 248.8 378 58.7
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-63 248.4 318 56.9
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.3e-63 248.1 366 63.9
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.9e-63 246.9 268 58.2
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.2e-62 243.4 343 51.9
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 3.2e-62 243.4 363 50.1
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.7e-61 240.4 336 56.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-60 238.4 367 55.6
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.5e-59 234.6 331 55.9
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 7.5e-59 232.3 368 54.9
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.7e-58 231.1 177 70.6
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.4e-57 228.0 216 60.6
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.7e-56 223.8 350 53.1
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 7.2e-54 215.7 379 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 7.5e-51 205.7 165 69.1
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 3.7e-50 203.4 115 80.0
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 5.0e-47 193.0 114 76.3
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 8.6e-47 192.2 344 45.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.3e-46 189.9 344 43.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 6.1e-45 186.0 245 62.4
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 3.4e-43 180.3 316 39.2
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 3.7e-42 176.8 250 54.0
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.1e-41 175.3 266 53.8
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.0e-40 171.0 239 48.5
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.4e-33 146.4 103 77.7
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-29 135.2 165 60.6
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 2.1e-29 134.4 270 38.9
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 2.2e-26 124.4 270 38.5
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.1e-25 122.1 154 57.1
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.4e-25 121.7 218 54.1
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 6.8e-20 102.8 92 47.8
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-19 102.1 131 48.1
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 8.4e-18 95.9 50 84.0
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 4.4e-11 73.6 133 56.4
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 2.7e-08 64.3 96 40.6
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 6.0e-08 63.2 92 42.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 7.9e-08 62.8 92 41.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.0e-07 62.4 41 63.4
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 3.0e-07 60.8 110 32.7
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 8.7e-07 59.3 93 38.7
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 8.7e-07 59.3 43 62.8
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 1.1e-06 58.9 105 38.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.5e-06 58.5 40 55.0
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 1.9e-06 58.2 102 35.3
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 2.5e-06 57.8 99 37.4
Gorai.009G406700 Gossypium raimondii HOM05D005264 ORTHO05D005428 2.5e-06 57.8 93 39.8
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 3.3e-06 57.4 40 62.5
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.3e-06 57.4 39 64.1
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 3.3e-06 57.4 93 40.9
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 4.3e-06 57.0 93 37.6
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 4.3e-06 57.0 37 64.9
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 5.6e-06 56.6 44 59.1
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.3e-06 56.2 33 66.7
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 7.3e-06 56.2 92 37.0
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 7.3e-06 56.2 104 36.5
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 9.6e-06 55.8 40 62.5
CSS0025735 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 9.6e-06 55.8 27 92.6
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 9.6e-06 55.8 37 59.5


User provided reference genes

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