Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25391 Davidia involucrata HOM05D002513 ORTHO05D002720 2.9e-44 181.4 87 100.0
Dinv01251 Davidia involucrata HOM05D002513 ORTHO05D002720 6.1e-42 173.7 87 96.6
Dinv04572 Davidia involucrata HOM05D002513 ORTHO05D002720 9.8e-40 166.4 86 93.0
Dinv39163 Davidia involucrata HOM05D002513 ORTHO05D002720 1.1e-38 162.9 82 95.1
Dinv21651 Davidia involucrata HOM05D002513 ORTHO05D002720 9.5e-35 149.8 83 89.2
CSS0000182 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 3.7e-31 137.9 81 79.0
GSVIVG01006271001 Vitis vinifera HOM05D002513 ORTHO05D002720 8.3e-31 136.7 83 77.1
Actinidia14412 Actinidia chinensis HOM05D002513 ORTHO05D002720 1.6e-29 132.5 82 75.6
Actinidia02147 Actinidia chinensis HOM05D002513 ORTHO05D002720 2.1e-29 132.1 84 78.6
Lj2A222G48 Lonicera japonica HOM05D002513 ORTHO05D002720 2.7e-29 131.7 87 74.7
vmacro00186 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 2.7e-29 131.7 81 76.5
Thecc.03G248600 Theobroma cacao HOM05D002513 ORTHO05D002720 3.5e-29 131.3 83 77.1
TAR629G3140 Trochodendron aralioides HOM05D002513 ORTHO05D002720 3.5e-29 131.3 84 75.0
Hma1.2p1_0316F.1_g122910 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 7.8e-29 130.2 81 79.0
Hma1.2p1_0316F.1_g122915 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 7.8e-29 130.2 81 79.0
COL.COLO4_37135 Corchorus olitorius HOM05D002513 ORTHO05D002720 1.3e-28 129.4 83 75.9
Rhsim11G0000900 Rhododendron simsii HOM05D002513 ORTHO05D002720 1.3e-28 129.4 77 77.9
Gohir.A12G215700 Gossypium hirsutum HOM05D002513 ORTHO05D002720 5.1e-28 127.5 83 75.9
Gohir.D12G218300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 5.1e-28 127.5 83 75.9
Gorai.008G233900 Gossypium raimondii HOM05D002513 ORTHO05D002720 6.6e-28 127.1 83 75.9
Duzib068G0483 Durio zibethinus HOM05D002513 ORTHO05D002720 8.6e-28 126.7 83 73.5
Nitab4.5_0006555g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 8.6e-28 126.7 82 73.2
Nn4g26338 Nelumbo nucifera HOM05D002513 ORTHO05D002720 1.5e-27 125.9 84 75.0
Peaxi162Scf01662g00119 Petunia axillaris HOM05D002513 ORTHO05D002720 3.3e-27 124.8 76 73.7
Nitab4.5_0004277g0010 Nicotiana tabacum HOM05D002513 ORTHO05D002720 4.3e-27 124.4 82 72.0
Sopen10g032620 Solanum pennellii HOM05D002513 ORTHO05D002720 5.6e-27 124.0 82 69.5
Haze_07948 Corylus avellana HOM05D002513 ORTHO05D002720 9.5e-27 123.2 83 73.5
Duzib205G1336 Durio zibethinus HOM05D002513 ORTHO05D002720 1.6e-26 122.5 83 71.1
Cpa.g.sc29.189 Carica papaya HOM05D002513 ORTHO05D002720 2.8e-26 121.7 84 69.0
QL12p011564 Quercus lobata HOM05D002513 ORTHO05D002720 2.8e-26 121.7 83 72.3
Solyc10g083150.3 Solanum lycopersicum HOM05D002513 ORTHO05D002720 4.7e-26 120.9 82 68.3
Atru.chr9.1284 Acer truncatum HOM05D002513 ORTHO05D002720 8.1e-26 120.2 82 69.5
Nn1g02339 Nelumbo nucifera HOM05D002513 ORTHO05D002720 8.1e-26 120.2 76 75.0
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 1.1e-25 119.8 85 71.8
Gohir.A08G168800 Gossypium hirsutum HOM05D002513 ORTHO05D002720 1.4e-25 119.4 83 68.7
Gohir.D08G187300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 1.8e-25 119.0 83 68.7
Gorai.004G197000 Gossypium raimondii HOM05D002513 ORTHO05D002720 1.8e-25 119.0 83 68.7
CsaV3_3G002590 Cucumis sativus L. HOM05D002513 ORTHO05D002720 2.3e-25 118.6 83 71.1
PGR042G3434 Punica granatum HOM05D002513 ORTHO05D002720 4.0e-25 117.9 83 68.7
Migut.A01126 Erythranthe guttata HOM05D002513 ORTHO05D002720 5.2e-25 117.5 82 68.3
Sabra03G0048900 Salix brachista HOM05D002513 ORTHO05D002720 5.2e-25 117.5 83 68.7
Oeu022895.1 Olea europaea HOM05D002513 ORTHO05D002720 8.9e-25 116.7 82 70.7
Potri.003G078800 Populus trichocarpa HOM05D002513 ORTHO05D002720 2.0e-24 115.5 83 67.5
Rhsim07G0110400 Rhododendron simsii HOM05D002513 ORTHO05D002720 2.6e-24 115.2 88 68.2
TAR636G3267 Trochodendron aralioides HOM05D002513 ORTHO05D002720 3.4e-24 114.8 77 74.0
Cc08_g12210 Coffea canephora HOM05D002513 ORTHO05D002720 4.4e-24 114.4 75 70.7
Lj8A268G24 Lonicera japonica HOM05D002513 ORTHO05D002720 4.4e-24 114.4 82 68.3
CAN.G841.7 Capsicum annuum HOM05D002513 ORTHO05D002720 5.8e-24 114.0 82 64.6
Manes.01G082800 Manihot esculenta HOM05D002513 ORTHO05D002720 5.8e-24 114.0 83 67.5
ClCG10G002560 Citrullus lanatus HOM05D002513 ORTHO05D002720 7.5e-24 113.6 83 71.1
Oeu002328.2 Olea europaea HOM05D002513 ORTHO05D002720 9.9e-24 113.2 83 68.7
TWI81G0262 Tripterygium wilfordii HOM05D002513 ORTHO05D002720 9.9e-24 113.2 83 67.5
DCAR_027767 Daucus carota HOM05D002513 ORTHO05D002720 1.7e-23 112.5 83 67.5
Eucgr.E00408 Eucalyptus grandis HOM05D002513 ORTHO05D002720 1.7e-23 112.5 84 67.9
arahy.Tifrunner.gnm1.ann1.3AS7PC Arachis hypogaea HOM05D002513 ORTHO05D002720 2.2e-23 112.1 82 67.1
PSO210G4067 Papaver somniferum HOM05D002513 ORTHO05D002720 2.2e-23 112.1 76 72.4
PSO832G0398 Papaver somniferum HOM05D002513 ORTHO05D002720 2.2e-23 112.1 76 72.4
Aqoxy5G00460 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 2.9e-23 111.7 76 69.7
arahy.Tifrunner.gnm1.ann1.PD7I3L Arachis hypogaea HOM05D002513 ORTHO05D002720 3.7e-23 111.3 82 67.1
Phvul.003G222100 Phaseolus vulgaris HOM05D002513 ORTHO05D002720 4.9e-23 110.9 68 73.5
TAR633G0646 Trochodendron aralioides HOM05D002513 ORTHO05D002720 4.9e-23 110.9 84 67.9
TAR636G2655 Trochodendron aralioides HOM05D002513 ORTHO05D002720 4.9e-23 110.9 84 67.9
arahy.Tifrunner.gnm1.ann1.2PBN0R Arachis hypogaea HOM05D002513 ORTHO05D002720 6.4e-23 110.5 82 65.9
Sabra01G0134900 Salix brachista HOM05D002513 ORTHO05D002720 6.4e-23 110.5 83 62.7
arahy.Tifrunner.gnm1.ann1.18SBFH Arachis hypogaea HOM05D002513 ORTHO05D002720 8.3e-23 110.2 82 65.9
arahy.Tifrunner.gnm1.ann1.98R2QB Arachis hypogaea HOM05D002513 ORTHO05D002720 8.3e-23 110.2 82 65.9
Potri.001G156000 Populus trichocarpa HOM05D002513 ORTHO05D002720 8.3e-23 110.2 83 63.9
arahy.Tifrunner.gnm1.ann1.H0C62V Arachis hypogaea HOM05D002513 ORTHO05D002720 1.4e-22 109.4 82 65.9
Glyma.05G061500 Glycine max HOM05D002513 ORTHO05D002720 1.9e-22 109.0 82 63.4
arahy.Tifrunner.gnm1.ann1.VIP11X Arachis hypogaea HOM05D002513 ORTHO05D002720 2.4e-22 108.6 82 64.6
MSTRG.12118 Avicennia marina HOM05D002513 ORTHO05D002720 2.4e-22 108.6 83 65.1
arahy.Tifrunner.gnm1.ann1.V507XA Arachis hypogaea HOM05D002513 ORTHO05D002720 3.2e-22 108.2 81 65.4
VMungo0251G3547 Vigna mungo HOM05D002513 ORTHO05D002720 3.2e-22 108.2 75 65.3
Cpa.g.sc53.64 Carica papaya HOM05D002513 ORTHO05D002720 4.1e-22 107.8 84 63.1
arahy.Tifrunner.gnm1.ann1.F98T17 Arachis hypogaea HOM05D002513 ORTHO05D002720 5.4e-22 107.5 82 63.4
arahy.Tifrunner.gnm1.ann1.Y2TGKW Arachis hypogaea HOM05D002513 ORTHO05D002720 5.4e-22 107.5 82 63.4
Glyma.17G143300 Glycine max HOM05D002513 ORTHO05D002720 5.4e-22 107.5 82 62.2
HanXRQChr03g0088821 Helianthus annuus HOM05D002513 ORTHO05D002720 5.4e-22 107.5 80 66.2
Lsat_1_v5_gn_6_92441 Lactuca sativa HOM05D002513 ORTHO05D002720 7.1e-22 107.1 80 66.2
vmacro14069 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 9.2e-22 106.7 82 63.4
Ciclev10018818m.g Citrus clementina HOM05D002513 ORTHO05D002720 1.6e-21 105.9 76 71.1
Ca_21976_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 3.5e-21 104.8 82 64.6
CiPaw.11G081500 Carya illinoinensis HOM05D002513 ORTHO05D002720 6.0e-21 104.0 76 65.8
SGA_v2.0_scaffold104G30173 Striga asiatica HOM05D002513 ORTHO05D002720 1.7e-20 102.4 83 62.7
HanXRQChr13g0417821 Helianthus annuus HOM05D002513 ORTHO05D002720 2.3e-20 102.1 84 64.3
Medtr4g100750 Medicago truncatula HOM05D002513 ORTHO05D002720 3.9e-20 101.3 81 63.0
Prupe.5G066400 Prunus persica HOM05D002513 ORTHO05D002720 3.9e-20 101.3 83 59.0
Sc01g0008310 Simmondsia chinensis HOM05D002513 ORTHO05D002720 3.9e-20 101.3 85 63.5
THA.LOC104814469 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 6.6e-20 100.5 87 58.6
Medtr5g097760 Medicago truncatula HOM05D002513 ORTHO05D002720 1.1e-19 99.8 84 60.7
ECA240G4211 Erigeron canadensis HOM05D002513 ORTHO05D002720 1.5e-19 99.4 82 59.8
CSS0008127 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 1.9e-19 99.0 55 87.3
Ca_03894_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 1.9e-19 99.0 68 67.6
Lj4g0017155 Lotus japonicus HOM05D002513 ORTHO05D002720 1.9e-19 99.0 84 61.9
Sed0012573 Sechium edule HOM05D002513 ORTHO05D002720 3.3e-19 98.2 83 65.1
CANSAT21G1233 Cannabis sativa HOM05D002513 ORTHO05D002720 4.3e-19 97.8 76 59.2
Hund14574 Selenicereus undatus HOM05D002513 ORTHO05D002720 5.6e-19 97.4 85 63.5
arahy.Tifrunner.gnm1.ann1.AB5AZK Arachis hypogaea HOM05D002513 ORTHO05D002720 7.3e-19 97.1 82 59.8
Medtr5g081800 Medicago truncatula HOM05D002513 ORTHO05D002720 7.3e-19 97.1 81 60.5
Psat4g074080 Pisum sativum HOM05D002513 ORTHO05D002720 9.5e-19 96.7 74 59.5
Psat5g188640 Pisum sativum HOM05D002513 ORTHO05D002720 4.7e-18 94.4 62 71.0
TPR.G24353 Trifolium pratense HOM05D002513 ORTHO05D002720 6.2e-18 94.0 74 60.8
TPR.G37621 Trifolium pratense HOM05D002070 ORTHO05D002489 8.1e-18 93.6 63 68.3
Cfa017519 Carpinus fangiana HOM05D002513 ORTHO05D002720 2.4e-17 92.0 70 64.3
MD04G1061900 Malus domestica HOM05D002513 ORTHO05D002720 2.4e-17 92.0 75 57.3
THA.LOC104798367 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 2.4e-17 92.0 84 57.1
Lalb_Chr09g0329991 Lupinus albus HOM05D002513 ORTHO05D002720 6.8e-17 90.5 77 58.4
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 6.8e-17 90.5 69 60.9
HPP92_004367 Vanilla planifolia HOM05D002513 ORTHO05D002720 6.8e-17 90.5 69 60.9
Aqoxy2G03401 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 1.5e-16 89.4 79 53.2
CDE06G2836 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 3.4e-16 88.2 83 51.8
MD06G1055600 Malus domestica HOM05D002513 ORTHO05D002720 4.4e-16 87.8 75 54.7
FvH4_5g19330 Fragaria vesca HOM05D002513 ORTHO05D002720 5.8e-16 87.4 75 57.3
FAN18G4043 Fragaria x ananassa HOM05D002513 ORTHO05D002720 5.8e-16 87.4 75 57.3
Lalb_Chr05g0221181 Lupinus albus HOM05D002513 ORTHO05D002720 5.8e-16 87.4 71 62.0
Aa31sc151G10 Aethionema arabicum HOM05D002513 ORTHO05D002720 9.9e-16 86.7 84 54.8
RcHm_v2.0_Chr7g0203801 Rosa chinensis HOM05D002513 ORTHO05D002720 9.9e-16 86.7 75 57.3
FAN08G2557 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.7e-15 85.9 75 56.0
FAN04G1005 Fragaria x ananassa HOM05D002513 ORTHO05D002720 2.2e-15 85.5 75 56.0
FAN13G1831 Fragaria x ananassa HOM05D002513 ORTHO05D002720 2.9e-15 85.1 75 56.0
PSO210G5624 Papaver somniferum HOM05D002513 ORTHO05D002720 2.9e-15 85.1 80 50.0
EL10Ac3g07351 Beta vulgaris HOM05D002513 ORTHO05D002720 3.8e-15 84.7 85 58.8
Aa31LG6G140 Aethionema arabicum HOM05D002513 ORTHO05D002720 1.1e-14 83.2 82 53.7
Carub.0008s0036 Capsella rubella HOM05D002513 ORTHO05D002720 1.1e-14 83.2 84 53.6
Medtr5g098230 Medicago truncatula HOM05D002513 ORTHO05D002720 1.4e-14 82.8 84 52.4
AUR62020988 Chenopodium quinoa HOM05D002513 ORTHO05D002720 2.4e-14 82.0 85 55.3
Ah.13g077420 Amaranthus hybridus HOM05D002513 ORTHO05D002720 3.2e-14 81.6 82 53.7
arahy.Tifrunner.gnm1.ann1.40EGC8 Arachis hypogaea HOM05D002513 ORTHO05D002720 3.2e-14 81.6 79 51.9
Haze_20631 Corylus avellana HOM05D002513 ORTHO05D002720 5.4e-14 80.9 64 60.9
COL.COLO4_10827 Corchorus olitorius HOM05D002513 ORTHO05D002720 7.1e-14 80.5 83 55.4
PSO761G0324 Papaver somniferum HOM05D002513 ORTHO05D002720 7.1e-14 80.5 80 48.8
CARHR173950 Cardamine hirsuta HOM05D002513 ORTHO05D002720 1.2e-13 79.7 84 50.0
unitig_8.g3015 Utricularia gibba HOM05D002513 ORTHO05D002720 1.6e-13 79.3 79 49.4
Sp2g12130 Schrenkiella parvula HOM05D002513 ORTHO05D002720 2.1e-13 79.0 84 50.0
AL8G10610 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 2.7e-13 78.6 85 51.8
SEGI_13497 Sequoiadendron giganteum HOM05D002513 ORTHO05D002720 2.7e-13 78.6 72 58.3
ATR0697G259 Amborella trichopoda HOM05D002513 ORTHO05D002720 3.5e-13 78.2 85 50.6
AUR62018445 Chenopodium quinoa HOM05D002513 ORTHO05D002720 3.5e-13 78.2 84 52.4
AL7G37310 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 4.6e-13 77.8 84 50.0
A09p23030 Brassica napus HOM05D002513 ORTHO05D002720 6.0e-13 77.4 84 51.2
BraA09t37907Z Brassica rapa HOM05D002513 ORTHO05D002720 6.0e-13 77.4 84 51.2
SHI07795 Sapria himalayana HOM05D002513 ORTHO05D002720 6.0e-13 77.4 55 61.8
BcaB07g30777 Brassica carinata HOM05D002513 ORTHO05D002720 1.0e-12 76.6 84 50.0
BcaC04g21626 Brassica carinata HOM05D002513 ORTHO05D002720 1.3e-12 76.3 84 50.0
C09p29740 Brassica napus HOM05D002513 ORTHO05D002720 1.3e-12 76.3 84 50.0
BolC9t55837H Brassica oleracea HOM05D002513 ORTHO05D002720 1.3e-12 76.3 84 50.0
Lalb_Chr16g0386791 Lupinus albus HOM05D002513 ORTHO05D002720 6.6e-12 73.9 71 57.7
AT5G47430 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 1.1e-11 73.2 84 48.8
BcaC09g50468 Brassica carinata HOM05D002513 ORTHO05D002720 2.5e-11 72.0 84 46.4
C01p25090 Brassica napus HOM05D002513 ORTHO05D002720 2.5e-11 72.0 84 46.4
BolC1t02460H Brassica oleracea HOM05D002513 ORTHO05D002720 5.6e-11 70.9 84 45.2
BcaNung00096 Brassica carinata HOM05D002513 ORTHO05D002720 7.3e-11 70.5 84 46.4
CDE07G1967 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 7.3e-11 70.5 55 54.5
MBI11_g07615_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 7.3e-11 70.5 88 48.9
A01p20000 Brassica napus HOM05D002513 ORTHO05D002720 9.6e-11 70.1 83 47.0
Sp7g16790 Schrenkiella parvula HOM05D002513 ORTHO05D002720 1.6e-10 69.3 84 44.0
Carub.0007s2401 Capsella rubella HOM05D002513 ORTHO05D002720 2.1e-10 68.9 83 45.8
MBI05_g04442_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 2.1e-10 68.9 86 48.8
BraA01t01923Z Brassica rapa HOM05D002513 ORTHO05D002720 4.8e-10 67.8 83 45.8
MBI05_g42865_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 6.2e-10 67.4 90 47.8
Os10g0431000 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 6.2e-10 67.4 77 55.8
AT4G17410 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 1.4e-09 66.2 84 46.4
Thhalv10024408m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 2.4e-09 65.5 84 45.2
PGSC0003DMG400010163 Solanum tuberosum HOM05D002513 ORTHO05D002720 4.0e-09 64.7 51 56.9
Zm00001eb047610 Zea mays HOM05D002513 ORTHO05D002720 1.5e-08 62.8 77 50.6
Nitab4.5_0001070g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 3.4e-08 61.6 78 38.5
Thhalv10000768m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 5.8e-08 60.8 63 55.6
Nitab4.5_0000348g0110 Nicotiana tabacum HOM05D002513 ORTHO05D002720 7.6e-08 60.5 78 38.5
TPR.G20363 Trifolium pratense HOM05D002513 ORTHO05D002720 2.2e-07 58.9 38 65.8
Manes.16G090800 Manihot esculenta HOM05D002513 ORTHO05D002720 3.8e-07 58.2 63 54.0
Manes.16G090700 Manihot esculenta HOM05D002513 ORTHO05D002720 6.4e-07 57.4 49 61.2
MELO3C013928.2 Cucumis melo HOM05D002513 ORTHO05D002720 1.1e-06 56.6 34 76.5
MBI05_g04451_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 1.9e-06 55.8 90 43.3
EL10Ac5g12361 Beta vulgaris HOM05D002513 ORTHO05D002720 5.4e-06 54.3 50 54.0
CARHR224010 Cardamine hirsuta HOM05D002513 ORTHO05D002720 7.1e-06 53.9 83 37.3


User provided reference genes

Program Settings