Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 7.0e-136 487.3 242 100.0
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 5.3e-43 178.7 131 67.2
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 9.7e-37 157.9 137 59.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-34 151.0 242 42.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.6e-34 149.8 228 41.7
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.3e-33 147.5 118 61.9
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.3e-33 147.5 118 61.9
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 3.8e-33 146.0 243 40.3
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.9e-32 143.7 152 48.0
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.5e-32 143.3 131 58.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.5e-32 142.1 144 54.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 7.2e-32 141.7 230 40.9
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.1e-31 140.2 234 39.7
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.7e-31 139.0 144 53.5
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.4e-30 137.5 250 36.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 3.0e-30 136.3 158 46.8
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 4.0e-30 136.0 236 39.0
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.2e-30 135.6 153 52.3
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.2e-30 135.6 136 54.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 8.8e-30 134.8 234 38.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.1e-29 134.4 141 51.1
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.5e-29 134.0 128 53.9
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.6e-29 133.3 141 51.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 3.3e-29 132.9 235 38.7
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.5e-29 131.7 141 51.1
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.5e-29 131.7 141 52.5
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-28 131.0 242 37.2
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.2e-28 130.2 142 48.6
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.7e-28 129.4 141 52.5
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.8e-28 129.0 141 51.8
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.8e-27 127.1 243 39.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-27 127.1 242 36.8
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.1e-27 126.3 159 45.3
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.1e-27 126.3 177 42.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 4.1e-27 125.9 237 38.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-26 124.4 242 36.4
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.2e-26 124.4 144 42.4
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.5e-26 122.9 212 36.8
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.9e-26 122.1 229 36.7
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 7.7e-26 121.7 137 46.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 1.3e-25 120.9 141 46.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.7e-25 120.6 128 46.9
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.7e-25 120.6 136 47.8
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 2.2e-25 120.2 233 37.8
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 2.9e-25 119.8 232 35.3
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.9e-25 119.8 232 35.3
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 5.0e-25 119.0 297 31.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 8.5e-25 118.2 216 36.1
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.5e-24 117.5 137 46.0
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.2e-24 116.3 135 46.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 4.2e-24 115.9 138 42.8
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 4.2e-24 115.9 168 38.1
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.5e-24 115.5 144 45.1
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.2e-24 115.2 235 34.0
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 7.2e-24 115.2 168 37.5
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 7.2e-24 115.2 168 37.5
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.6e-23 112.8 152 42.8
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 4.7e-23 112.5 140 42.9
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 8.0e-23 111.7 146 41.1
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 1.0e-22 111.3 207 39.1
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-22 110.9 138 39.9
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-22 110.9 162 38.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.3e-22 110.2 244 34.0
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.0e-22 109.4 232 35.3
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 5.2e-22 109.0 144 38.9
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 5.2e-22 109.0 107 54.2
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 8.8e-22 108.2 232 34.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.2e-21 107.8 138 38.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.5e-21 107.5 137 40.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-21 106.3 147 40.8
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.4e-21 106.3 147 40.8
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.4e-21 106.3 147 40.8
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 5.7e-21 105.5 127 49.6
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 5.7e-21 105.5 323 28.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 7.5e-21 105.1 128 39.1
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 7.5e-21 105.1 139 40.3
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 1.7e-20 104.0 263 31.6
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.8e-20 103.2 132 45.5
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.3e-20 102.1 152 38.2
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 6.3e-20 102.1 133 39.8
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 6.3e-20 102.1 190 35.3
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 8.3e-20 101.7 164 36.6
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-19 101.3 175 32.6
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.1e-19 101.3 163 36.2
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.1e-19 101.3 138 38.4
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.8e-19 100.5 150 38.7
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.1e-19 99.8 188 34.6
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.1e-19 99.4 174 35.6
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 7.0e-19 98.6 151 37.7
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 4.5e-18 95.9 245 31.0
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 4.5e-18 95.9 194 39.2
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-17 94.7 133 38.3
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.2e-17 93.6 127 37.0
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.9e-17 93.2 245 31.8
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 3.8e-17 92.8 166 35.5
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.8e-17 92.8 135 38.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 5.0e-17 92.4 149 36.2
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-17 92.0 166 35.5
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 6.5e-17 92.0 166 35.5
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 6.5e-17 92.0 166 35.5
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 6.5e-17 92.0 238 34.0
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 8.5e-17 91.7 197 33.5
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 8.5e-17 91.7 244 30.3
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 1.1e-16 91.3 132 41.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 1.1e-16 91.3 106 44.3
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.2e-16 89.7 139 34.5
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 3.2e-16 89.7 130 39.2
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 7.2e-16 88.6 138 34.8
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 9.4e-16 88.2 137 38.7
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 9.4e-16 88.2 155 38.1
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.2e-15 87.8 246 31.7
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 4.7e-15 85.9 116 45.7
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 6.1e-15 85.5 138 40.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 6.1e-15 85.5 140 35.7
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 1.4e-14 84.3 233 31.8
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 4.0e-14 82.8 142 34.5
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 8.8e-14 81.6 128 36.7
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 1.2e-13 81.3 191 31.4
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 9.8e-13 78.2 122 38.5
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 2.2e-12 77.0 126 41.3
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 8.3e-12 75.1 107 42.1
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 8.3e-12 75.1 125 33.6
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.1e-11 72.8 136 39.0
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 7.7e-10 68.6 163 31.3
CAN.G1733.3 Capsicum annuum HOM05D004190 ORTHO05D004692 1.3e-09 67.8 105 40.0
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.3e-09 67.8 133 29.3
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.7e-09 67.4 101 43.6
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 6.6e-09 65.5 88 46.6
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 8.6e-09 65.1 135 37.0
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.9e-08 63.9 84 44.0
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.3e-08 63.2 138 30.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.3e-08 63.2 131 27.5
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.6e-08 62.4 73 46.6
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.6e-07 60.8 73 45.2
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.6e-07 60.8 136 30.9
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 2.1e-07 60.5 197 27.9
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.6e-07 59.7 76 46.1
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 6.1e-07 58.9 151 27.8
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 8.0e-07 58.5 167 25.7
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 8.0e-07 58.5 167 25.7
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.4e-06 57.8 91 40.7
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.8e-06 57.4 162 25.9
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.3e-06 57.0 130 28.5
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-06 57.0 129 32.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.3e-06 57.0 129 32.6
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.3e-06 57.0 53 50.9
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.0e-06 56.6 53 47.2
Dinv35597 Davidia involucrata HOM05D022761 ORTHO05D022494 5.2e-06 55.8 107 29.0
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 5.2e-06 55.8 140 29.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.2e-06 55.8 149 28.9
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 6.8e-06 55.5 56 37.5
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 6.8e-06 55.5 75 41.3
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 8.9e-06 55.1 56 37.5


User provided reference genes

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