Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 6.2e-111 404.1 194 100.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.4e-102 375.6 194 92.8
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.0e-89 333.6 237 70.0
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.3e-87 326.6 195 80.0
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-87 326.6 192 78.6
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.7e-87 326.2 194 78.4
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.8e-87 325.5 192 77.1
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 8.2e-87 323.9 228 71.9
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 8.2e-87 323.9 228 71.9
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 5.9e-85 317.8 194 77.3
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 8.5e-84 313.9 188 78.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.9e-83 312.8 194 75.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 7.9e-82 307.4 200 74.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 7.9e-82 307.4 200 74.0
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.4e-81 306.6 204 70.6
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.4e-81 306.6 194 75.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.5e-80 303.1 192 73.4
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.5e-80 303.1 193 71.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 8.2e-79 297.4 178 79.2
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 9.1e-78 293.9 193 69.4
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.6e-77 293.1 192 71.9
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 2.0e-77 292.7 200 71.0
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 5.9e-77 291.2 200 70.0
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 7.7e-77 290.8 192 70.3
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.0e-76 290.4 200 69.5
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.7e-76 289.7 192 71.4
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.9e-76 288.9 200 69.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 5.0e-76 288.1 194 67.0
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.5e-75 285.8 199 68.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.5e-75 285.8 195 68.7
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 4.2e-75 285.0 192 64.6
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 7.2e-75 284.3 192 68.2
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.8e-73 279.6 192 67.7
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.0e-73 278.9 234 62.0
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 6.7e-73 277.7 193 68.4
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.0e-72 276.2 194 63.9
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.0e-72 276.2 199 67.3
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.3e-72 275.4 177 72.3
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 3.3e-72 275.4 195 68.2
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 4.4e-72 275.0 194 62.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 7.5e-72 274.2 201 67.2
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 9.7e-72 273.9 238 60.9
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.3e-71 273.5 199 67.3
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.7e-71 273.1 196 68.4
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.2e-71 272.7 194 67.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.2e-71 272.7 194 62.4
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 2.2e-71 272.7 184 72.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.8e-71 272.3 194 67.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.8e-71 272.3 203 65.0
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.8e-71 271.6 194 67.0
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 4.8e-71 271.6 192 61.5
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 8.2e-71 270.8 203 65.0
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.1e-70 270.4 192 66.1
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 7.0e-70 267.7 194 62.4
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 9.1e-70 267.3 223 59.2
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.6e-69 266.5 194 63.4
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 7.7e-69 264.2 194 66.5
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-68 263.5 205 64.4
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-68 263.5 205 64.4
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.7e-68 263.1 194 67.0
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 2.9e-68 262.3 194 61.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 5.0e-68 261.5 193 59.6
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 6.5e-68 261.2 208 60.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.5e-67 259.2 193 63.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 3.2e-67 258.8 193 60.1
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 3.2e-67 258.8 193 60.1
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 3.2e-67 258.8 193 60.1
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.2e-67 258.8 194 65.5
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 5.5e-67 258.1 205 63.4
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 4.7e-66 255.0 208 59.6
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 4.0e-65 251.9 168 69.6
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 5.2e-65 251.5 210 56.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.8e-65 251.1 192 66.1
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.2e-64 250.4 195 63.1
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 5.7e-64 248.1 191 66.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.8e-63 245.7 193 57.5
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 4.8e-63 245.0 182 61.0
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 4.8e-63 245.0 192 58.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.4e-62 243.4 208 58.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 2.4e-62 242.7 192 61.5
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 3.1e-62 242.3 198 56.6
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 2.0e-61 239.6 192 62.0
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 4.5e-61 238.4 178 63.5
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 4.5e-61 238.4 207 57.0
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.0e-60 237.3 178 64.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.7e-60 236.5 207 58.0
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.9e-60 235.7 192 61.5
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 3.8e-60 235.3 222 50.0
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.9e-59 233.0 194 60.3
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 7.2e-59 231.1 194 59.8
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 4.7e-58 228.4 191 61.8
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.0e-57 225.7 261 45.2
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.0e-57 225.3 210 55.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.2e-56 223.8 194 56.2
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.5e-56 223.4 192 54.7
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.7e-55 218.8 192 54.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.4e-54 216.1 192 52.6
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 3.1e-54 215.7 170 61.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.4e-54 214.9 177 62.1
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 5.4e-54 214.9 192 49.5
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.6e-53 213.4 193 55.4
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.7e-53 212.6 192 53.6
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 3.5e-53 212.2 135 80.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.5e-53 211.8 192 53.1
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.0e-52 210.7 193 51.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 8.0e-50 201.1 156 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.4e-48 195.7 192 45.3
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.3e-47 193.7 122 71.3
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 4.9e-47 191.8 160 62.5
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 6.2e-42 174.9 204 43.6
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 6.2e-42 174.9 132 65.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.1e-41 172.6 192 46.4
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.1e-38 164.1 192 47.4
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.6e-37 160.2 132 58.3
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.5e-37 159.1 127 59.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.1e-35 154.1 204 39.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.3e-35 152.5 130 57.7
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.6e-35 151.8 199 44.2
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.7e-34 148.7 98 71.4
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.8e-32 141.7 140 56.4
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 2.9e-31 139.4 114 58.8
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.5e-29 132.5 98 67.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 4.6e-29 132.1 104 64.4
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.9e-28 129.0 96 66.7
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 9.5e-27 124.4 94 54.3
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-26 124.0 101 64.4
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.1e-26 123.2 98 59.2
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.2e-25 118.6 109 57.8
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.9e-22 110.2 75 73.3
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 3.2e-22 109.4 105 50.5
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.6e-21 107.1 70 71.4
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.3e-20 104.0 62 69.4
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.3e-20 104.0 102 51.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 3.0e-20 102.8 79 55.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 1.9e-19 100.1 102 54.9
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.5e-19 99.8 68 67.6
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.3e-19 99.0 71 62.0
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.6e-19 98.6 67 62.7
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.6e-18 97.1 68 70.6
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-13 80.5 47 70.2
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.0e-12 77.8 62 61.3
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 6.6e-12 75.1 43 74.4
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.5e-11 73.9 123 35.0
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.3e-11 72.4 55 58.2
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.3e-10 70.9 40 80.0
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.6e-10 70.5 57 54.4
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.8e-10 69.7 156 32.1
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-09 67.8 52 55.8
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 1.8e-09 67.0 107 43.0
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 9.0e-09 64.7 34 73.5
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.9e-07 59.7 64 51.6
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 3.8e-07 59.3 41 61.0
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 4.9e-07 58.9 41 61.0
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.4e-06 57.4 81 42.0
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.2e-06 56.2 64 50.0
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.1e-06 55.1 45 60.0


User provided reference genes

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