Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 6.8e-298 1026.5 516 100.0
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.5e-244 849.4 533 81.1
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 7.4e-244 847.0 533 80.7
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 4.6e-238 827.8 504 82.3
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 1.1e-231 806.6 529 76.7
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 4.2e-231 804.7 534 76.2
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 5.2e-229 797.7 438 91.6
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.4e-226 789.6 522 76.6
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.1e-226 788.1 522 76.4
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 9.1e-226 786.9 531 74.6
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 9.1e-226 786.9 534 75.3
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.2e-225 786.6 525 77.1
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 6.5e-224 780.8 533 73.5
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.9e-223 779.2 498 77.7
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 1.9e-223 779.2 528 73.9
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 1.9e-223 779.2 528 73.9
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 3.2e-223 778.5 528 73.9
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.7e-222 775.4 520 75.0
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 4.0e-221 771.5 533 74.7
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 8.8e-221 770.4 533 73.5
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.2e-220 770.0 536 73.9
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.3e-220 768.5 466 82.6
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 7.5e-220 767.3 533 73.4
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.7e-219 766.1 503 76.7
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 4.1e-218 761.5 589 69.3
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 7.0e-218 760.8 513 76.8
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.2e-217 760.0 522 74.7
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.5e-215 753.1 525 73.0
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 4.7e-214 748.0 554 70.6
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 6.1e-214 747.7 507 75.3
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.0e-213 746.9 531 72.7
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.4e-213 746.5 556 70.0
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 3.0e-213 745.3 534 71.3
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.2e-212 743.4 493 74.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 5.7e-212 741.1 491 75.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.8e-210 736.1 563 69.3
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 4.1e-210 734.9 563 68.7
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.1e-210 733.8 522 71.8
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.2e-209 733.4 534 70.4
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 3.5e-209 731.9 537 70.8
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.7e-208 729.6 524 72.1
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.1e-206 722.6 531 69.7
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.8e-206 722.2 535 70.3
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 5.2e-205 718.0 554 67.9
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 2.0e-204 716.1 534 70.2
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.3e-203 713.4 476 75.6
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 3.7e-203 711.8 549 68.5
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 5.4e-202 708.0 534 69.1
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 7.0e-202 707.6 533 69.8
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 3.5e-201 705.3 533 69.6
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.9e-201 704.5 528 69.7
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 6.6e-200 701.0 526 69.4
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 8.6e-200 700.7 505 71.1
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 3.3e-199 698.7 528 68.8
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.0e-197 693.7 532 67.5
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 2.9e-195 685.6 446 76.7
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 6.4e-195 684.5 520 68.7
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 8.3e-195 684.1 516 69.4
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.6e-193 679.9 512 69.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.6e-193 679.9 515 69.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 2.0e-193 679.5 516 70.2
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.7e-193 679.1 492 71.3
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.9e-192 675.2 512 68.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 3.9e-192 675.2 543 65.9
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 9.5e-191 670.6 530 66.6
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.9e-189 664.1 590 62.7
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 8.9e-189 664.1 507 67.1
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.5e-188 663.3 533 65.9
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 4.4e-188 661.8 534 64.2
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 7.5e-188 661.0 530 64.5
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 7.5e-188 661.0 530 64.5
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.3e-187 660.2 519 66.9
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.3e-187 660.2 539 65.1
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 8.3e-187 657.5 533 64.2
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 8.3e-187 657.5 521 64.9
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.1e-186 657.1 532 64.1
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.1e-186 657.1 532 64.1
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.1e-186 657.1 517 66.5
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.1e-186 657.1 499 69.1
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 7.0e-186 654.4 533 63.4
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 4.6e-185 651.7 533 63.4
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 2.3e-184 649.4 456 72.1
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.1e-182 642.9 426 75.1
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 3.1e-181 639.0 531 64.0
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 3.1e-181 639.0 535 62.8
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 4.0e-181 638.6 524 63.5
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 5.2e-181 638.3 545 62.4
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.5e-180 636.7 537 62.6
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.1e-175 620.5 525 64.2
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 5.6e-175 618.2 465 68.8
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 4.4e-172 608.6 531 61.2
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 3.8e-163 578.9 449 65.3
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 9.3e-162 574.3 426 68.5
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 2.1e-150 536.6 516 56.0
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 2.0e-148 530.0 486 58.8
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 9.1e-117 424.9 296 74.3
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.2e-112 409.1 264 77.7
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.0e-107 394.8 322 62.7
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.4e-101 373.6 266 72.6
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-93 347.8 266 66.9
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.5e-90 337.8 282 64.2
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 8.9e-88 328.6 457 43.3
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 4.0e-80 303.1 419 40.6
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.2e-79 301.6 167 83.2
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 5.0e-75 286.2 197 72.6
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.2e-64 249.6 384 37.5
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.2e-64 249.6 432 36.8
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.1e-60 237.7 147 81.0
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.3e-54 218.4 269 48.3
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.7e-54 218.0 125 76.0
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 8.4e-54 215.7 125 78.4
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 7.3e-50 202.6 147 66.0
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.6e-47 194.1 165 60.6
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 6.6e-43 179.5 336 36.0
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 9.6e-34 149.1 104 77.9
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 1.3e-33 148.7 80 82.5
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.4e-32 145.2 219 41.6
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 7.1e-29 132.9 128 63.3
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 8.7e-27 125.9 81 74.1
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.0e-23 114.8 183 44.8
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.2e-22 111.3 99 63.6
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.5e-22 109.8 81 71.6
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 7.4e-18 96.3 112 50.9
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 9.7e-18 95.9 76 69.7
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 2.2e-17 94.7 53 81.1
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 5.3e-16 90.1 140 43.6
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 7.7e-15 86.3 93 48.4
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 2.5e-13 81.3 67 70.1
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 2.7e-12 77.8 45 71.1
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 4.1e-08 63.9 32 84.4


User provided reference genes

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