Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21062 Davidia involucrata HOM05D001374 ORTHO05D004296 1.9e-142 509.2 264 100.0
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 5.2e-76 288.5 256 64.1
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.5e-75 287.0 256 64.1
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 2.2e-74 283.1 256 62.9
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.7e-72 276.2 244 66.4
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 4.6e-72 275.4 249 62.2
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.1e-70 270.8 250 64.4
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.5e-70 269.6 255 60.0
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 4.3e-70 268.9 250 62.0
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 5.6e-70 268.5 253 60.5
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 2.1e-69 266.5 258 60.5
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.8e-69 266.2 250 61.2
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 1.4e-68 263.8 251 59.8
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 1.8e-68 263.5 259 57.9
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 4.0e-68 262.3 251 57.4
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 1.2e-67 260.8 248 58.1
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.5e-67 260.4 254 58.3
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 3.4e-67 259.2 256 58.6
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.7e-66 256.9 255 57.3
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 4.9e-66 255.4 245 57.6
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 1.4e-65 253.8 241 58.5
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 2.4e-65 253.1 246 57.7
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 2.4e-65 253.1 250 60.0
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 2.4e-65 253.1 250 57.6
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 4.1e-65 252.3 255 54.5
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 9.2e-65 251.1 241 58.5
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 1.2e-64 250.8 268 53.4
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 1.2e-64 250.8 268 53.4
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 1.2e-64 250.8 241 57.7
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.6e-64 250.4 250 56.8
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 3.5e-64 249.2 242 57.9
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 6.0e-64 248.4 248 56.5
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 6.0e-64 248.4 246 58.5
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.7e-63 246.9 249 59.4
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 2.3e-63 246.5 248 59.7
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 5.0e-63 245.4 255 56.9
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 6.6e-63 245.0 249 53.4
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.5e-62 243.8 250 54.8
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 1.9e-62 243.4 248 57.3
Migut.O00776 Erythranthe guttata HOM05D001374 ORTHO05D004296 3.3e-62 242.7 246 55.7
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 5.6e-62 241.9 246 55.7
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 9.5e-62 241.1 255 56.9
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 1.2e-61 240.7 246 56.9
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 1.2e-61 240.7 255 56.5
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 1.2e-61 240.7 255 56.5
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 1.6e-61 240.4 245 55.1
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 2.8e-61 239.6 244 57.8
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 3.6e-61 239.2 245 55.9
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 3.6e-61 239.2 251 54.6
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 4.7e-61 238.8 247 55.5
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 8.1e-61 238.0 246 55.7
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 1.8e-60 236.9 246 57.7
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 1.8e-60 236.9 246 56.5
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 3.1e-60 236.1 256 53.9
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 6.8e-60 235.0 260 52.7
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.5e-59 233.8 235 58.7
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 4.4e-59 232.3 247 55.9
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 5.8e-59 231.9 253 53.0
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 1.7e-58 230.3 247 55.1
Glyma.20G117150 Glycine max HOM05D001374 ORTHO05D004296 1.7e-58 230.3 252 55.6
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 2.2e-58 229.9 262 53.1
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 2.2e-58 229.9 242 56.6
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 4.9e-58 228.8 247 53.0
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 6.4e-58 228.4 253 54.9
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 8.3e-58 228.0 247 55.5
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 1.1e-57 227.6 247 54.7
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 1.4e-57 227.3 241 55.2
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.4e-57 227.3 253 54.5
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.9e-57 226.9 261 51.3
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 1.9e-57 226.9 253 55.3
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 2.4e-57 226.5 242 56.6
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 3.2e-57 226.1 242 56.2
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 3.2e-57 226.1 242 56.2
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 3.2e-57 226.1 242 56.2
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 4.1e-57 225.7 253 51.0
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 5.4e-57 225.3 261 50.6
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 5.4e-57 225.3 256 50.8
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 5.4e-57 225.3 242 55.8
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 7.1e-57 224.9 242 56.6
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.2e-56 224.2 246 54.5
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.2e-56 224.2 242 56.2
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.6e-56 223.8 255 49.4
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 1.6e-56 223.8 254 52.0
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 2.7e-56 223.0 286 50.0
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 3.5e-56 222.6 255 49.0
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 6.0e-56 221.9 246 50.8
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 6.0e-56 221.9 246 50.8
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.0e-55 221.1 252 50.8
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.3e-55 220.7 242 55.4
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 1.3e-55 220.7 255 51.4
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 1.7e-55 220.3 250 52.0
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 1.7e-55 220.3 246 54.1
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 2.3e-55 219.9 250 52.0
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 2.3e-55 219.9 247 53.4
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 5.1e-55 218.8 252 52.8
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 8.6e-55 218.0 244 54.1
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 2.5e-54 216.5 247 53.0
MBI16_g23453_MAGBIO Magnolia biondii HOM05D001374 ORTHO05D004296 2.3e-52 209.9 238 53.8
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 4.0e-52 209.1 240 53.8
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 5.2e-52 208.8 243 53.9
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 6.8e-52 208.4 246 51.2
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 6.8e-52 208.4 247 51.4
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 8.9e-52 208.0 246 52.4
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 1.2e-51 207.6 246 51.2
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 5.8e-51 205.3 259 49.0
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 2.9e-50 203.0 249 51.4
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 3.7e-50 202.6 246 51.2
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 6.4e-50 201.8 245 49.4
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 6.4e-50 201.8 245 49.4
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 1.1e-49 201.1 243 49.4
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.1e-49 201.1 250 47.2
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 1.9e-49 200.3 257 47.1
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 2.4e-49 199.9 246 48.8
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.4e-49 199.9 253 48.2
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 7.1e-49 198.4 244 49.2
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 1.6e-48 197.2 248 48.4
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.6e-48 197.2 253 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 6.6e-47 191.8 235 47.7
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.3e-46 189.1 277 44.8
Potri.010G122866 Populus trichocarpa HOM05D001374 ORTHO05D004296 2.8e-45 186.4 242 50.4
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 3.6e-45 186.0 242 47.5
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 3.6e-45 186.0 243 51.0
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 8.1e-45 184.9 246 45.9
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 2.4e-44 183.3 240 45.4
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.0e-44 182.6 247 46.6
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 5.2e-44 182.2 259 48.3
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 1.3e-42 177.6 198 51.5
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 1.0e-39 167.9 246 44.3
SEGI_36555 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 1.6e-37 160.6 238 43.7
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.1e-36 157.9 246 41.1
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 7.6e-35 151.8 247 42.9
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 1.9e-33 147.1 224 45.1
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 1.0e-31 141.4 252 38.1
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 3.0e-31 139.8 89 79.8
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 8.7e-31 138.3 89 80.9
CDE07G1626 Ceratophyllum demersum HOM05D001374 ORTHO05D013421 1.4e-28 131.0 92 71.7
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 6.9e-28 128.6 240 38.8
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 3.8e-26 122.9 181 45.9
BcaC01g03668 Brassica carinata HOM05D001374 ORTHO05D013421 8.4e-26 121.7 154 51.3
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 4.2e-25 119.4 236 36.4
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 3.9e-23 112.8 224 39.3
AagrBONN_evm.TU.Sc2ySwM_368.245 Anthoceros agrestis HOM05D000436 ORTHO05D000678 5.1e-23 112.5 208 40.4
AL6G31230 Arabidopsis lyrata HOM05D001374 ORTHO05D013421 9.6e-22 108.2 85 65.9
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.3e-21 107.8 152 50.7
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 1.4e-20 104.4 83 63.9
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 9.0e-20 101.7 218 37.2
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 2.2e-18 97.1 82 64.6
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 4.6e-16 89.4 257 29.6
BolC3t17283H Brassica oleracea HOM05D001374 ORTHO05D013421 1.9e-14 84.0 142 44.4
C03p83240 Brassica napus HOM05D001374 ORTHO05D013421 2.5e-14 83.6 154 40.3
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 7.4e-14 82.0 234 31.2
C04p02560 Brassica napus HOM05D001374 ORTHO05D013421 1.6e-13 80.9 61 70.5
BolC4t21900H Brassica oleracea HOM05D001374 ORTHO05D013421 1.6e-13 80.9 61 70.5
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 2.1e-13 80.5 236 31.4
C07p30590 Brassica napus HOM05D001374 ORTHO05D013421 2.8e-13 80.1 56 69.6
BcaC02g12764 Brassica carinata HOM05D001374 ORTHO05D013421 6.3e-13 79.0 61 68.9
BolC7t43598H Brassica oleracea HOM05D001374 ORTHO05D013421 8.2e-13 78.6 55 69.1
Ah.02g127600 Amaranthus hybridus HOM05D001374 ORTHO05D013421 1.8e-12 77.4 83 49.4
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.1e-12 76.6 236 31.8
RcHm_v2.0_Chr6g0267551 Rosa chinensis HOM05D001374 ORTHO05D004296 2.6e-11 73.6 210 32.4
BraA04t17049Z Brassica rapa HOM05D001374 ORTHO05D013421 4.5e-11 72.8 160 36.2
BraA05t19512Z Brassica rapa HOM05D001374 ORTHO05D013421 1.3e-10 71.2 62 62.9
Mapoly0089s0016 Marchantia polymorpha HOM05D001374 ORTHO05D013421 1.7e-10 70.9 193 32.1
CARHR061030 Cardamine hirsuta HOM05D001374 ORTHO05D004296 6.1e-08 62.4 73 49.3
C03p49890 Brassica napus HOM05D001374 ORTHO05D013421 3.3e-06 56.6 154 37.7


User provided reference genes

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