Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20830 Davidia involucrata HOM05D001816 ORTHO05D038523 3.3e-56 221.5 112 100.0
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 2.3e-25 119.0 175 47.4
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.9e-25 118.2 178 46.6
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.8e-25 117.1 175 46.3
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.1e-24 116.7 175 46.3
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.0e-21 105.9 168 45.2
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.5e-19 99.0 175 43.4
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.0e-17 93.6 177 38.4
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.0e-17 93.6 177 38.4
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.4e-17 93.2 178 38.2
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 1.8e-17 92.8 177 39.5
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.8e-17 92.8 60 75.0
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.8e-17 92.8 177 39.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 3.0e-17 92.0 180 37.8
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 3.0e-17 92.0 180 38.3
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 3.0e-17 92.0 180 38.3
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 6.7e-17 90.9 179 39.1
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.5e-16 89.7 57 78.9
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 3.3e-16 88.6 175 41.7
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 7.5e-16 87.4 178 37.6
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.7e-15 86.3 175 37.7
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 2.2e-15 85.9 175 37.7
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 2.8e-15 85.5 57 73.7
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 3.7e-15 85.1 176 39.8
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 8.2e-15 84.0 57 71.9
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 2.4e-14 82.4 178 38.2
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 2.4e-14 82.4 175 36.0
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 3.1e-14 82.0 156 39.7
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 9.1e-14 80.5 175 37.1
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.1e-14 80.5 57 70.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.2e-13 80.1 57 68.4
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.6e-13 79.7 173 35.8
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.0e-13 79.3 57 68.4
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.0e-13 79.3 175 36.6
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 2.7e-13 79.0 174 35.6
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.7e-13 79.0 57 70.2
Cpa.g.c28071.1 Carica papaya HOM05D001816 ORTHO05D002001 4.5e-13 78.2 107 45.8
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.3e-12 76.6 106 45.3
MELO3C027308.2 Cucumis melo HOM05D001816 ORTHO05D002001 1.7e-12 76.3 107 47.7
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.2e-12 75.9 57 66.7
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.9e-12 75.5 107 47.7
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 2.9e-12 75.5 107 43.9
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 5.0e-12 74.7 57 68.4
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 5.0e-12 74.7 175 36.0
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 6.5e-12 74.3 107 43.9
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 6.5e-12 74.3 107 43.9
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 6.5e-12 74.3 57 68.4
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-11 73.6 57 66.7
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 1.1e-11 73.6 70 60.0
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 1.1e-11 73.6 70 60.0
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.1e-11 73.6 107 43.9
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 64.9
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 1.5e-11 73.2 57 63.2
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.5e-11 73.2 175 37.1
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 1.9e-11 72.8 175 34.9
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 1.9e-11 72.8 175 34.9
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 1.9e-11 72.8 175 34.9
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.9e-11 72.8 175 34.9
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.9e-11 72.8 57 66.7
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.9e-11 72.8 175 32.6
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 2.5e-11 72.4 57 66.7
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 2.5e-11 72.4 57 64.9
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 63.2
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 63.2
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 63.2
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 63.2
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 63.2
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 4.2e-11 71.6 57 61.4
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 5.5e-11 71.2 57 63.2
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 5.5e-11 71.2 175 34.9
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.5e-11 71.2 57 63.2
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 7.2e-11 70.9 57 61.4
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 7.2e-11 70.9 57 61.4
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 7.2e-11 70.9 108 44.4
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 7.2e-11 70.9 57 63.2
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 7.2e-11 70.9 174 35.6
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 7.2e-11 70.9 174 36.2
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.4e-11 70.5 106 43.4
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 9.4e-11 70.5 57 64.9
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 9.4e-11 70.5 57 64.9
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 9.4e-11 70.5 57 64.9
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.2e-10 70.1 108 42.6
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.6e-10 69.7 174 35.1
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.1e-10 69.3 57 63.2
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 2.1e-10 69.3 146 36.3
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.7e-10 68.9 78 53.8
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.7e-10 68.9 78 53.8
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 2.7e-10 68.9 57 66.7
Cc11_g00080 Coffea canephora HOM05D001816 ORTHO05D002001 2.7e-10 68.9 59 62.7
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.7e-10 68.9 174 35.1
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.7e-10 68.9 81 49.4
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 2.7e-10 68.9 57 66.7
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 2.7e-10 68.9 107 42.1
Sp1g37050 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.6e-10 68.6 58 60.3
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 4.7e-10 68.2 57 63.2
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 4.7e-10 68.2 174 35.6
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 4.7e-10 68.2 57 66.7
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 4.7e-10 68.2 57 66.7
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 4.7e-10 68.2 57 64.9
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 6.1e-10 67.8 57 64.9
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 8.0e-10 67.4 60 60.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 8.0e-10 67.4 57 63.2
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 8.0e-10 67.4 57 63.2
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 8.0e-10 67.4 60 58.3
SEGI_10768 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 8.0e-10 67.4 57 63.2
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 8.0e-10 67.4 108 42.6
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.0e-09 67.0 59 62.7
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 1.0e-09 67.0 57 66.7
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 1.0e-09 67.0 73 56.2
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.0e-09 67.0 175 32.0
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 1.4e-09 66.6 57 64.9
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.3e-09 65.9 111 39.6
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.0e-09 65.5 106 41.5
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 4.0e-09 65.1 57 63.2
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 4.0e-09 65.1 57 63.2
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 5.2e-09 64.7 57 59.6
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 6.8e-09 64.3 60 58.3
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 8.8e-09 63.9 98 44.9
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 8.8e-09 63.9 57 59.6
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.2e-08 63.5 57 54.4
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.2e-08 63.5 57 52.6
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.5e-08 63.2 60 56.7
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.5e-08 63.2 63 52.4
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.6e-08 62.4 107 41.1
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 5.7e-08 61.2 60 50.0
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.7e-07 59.7 105 40.0
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.7e-07 59.7 57 59.6
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 2.2e-07 59.3 60 51.7
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 2.2e-07 59.3 60 51.7
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 2.8e-07 58.9 57 54.4
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.8e-07 58.9 78 47.4
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 4.8e-07 58.2 78 44.9
Aqoxy2G01449 Aquilegia oxysepala HOM05D001816 ORTHO05D038523 1.1e-06 57.0 57 52.6
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.4e-06 56.6 70 52.9
Pp3c6_11150 Physcomitrium patens HOM05D001816 ORTHO05D002001 7.0e-06 54.3 81 39.5


User provided reference genes

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