Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.0e-210 736.5 377 100.0
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 8.8e-186 653.7 381 88.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.5e-182 641.7 376 86.7
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.4e-177 624.8 375 85.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.5e-177 624.0 375 84.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.5e-177 624.0 375 84.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 6.5e-173 610.9 364 86.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 8.0e-171 604.0 377 82.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.8e-170 602.8 374 84.8
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.3e-170 602.4 374 84.5
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.2e-168 595.9 386 82.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 5.9e-166 587.8 377 80.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.5e-164 583.2 381 78.7
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.9e-164 582.8 348 86.8
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.2e-164 582.0 383 80.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.2e-164 581.6 369 82.4
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 5.5e-164 581.3 369 79.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 7.2e-164 580.9 356 83.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.7e-163 578.2 363 82.9
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 3.0e-162 575.5 384 79.9
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.0e-162 575.1 327 89.6
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.2e-162 574.7 355 83.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.2e-162 574.7 377 79.8
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 6.8e-162 574.3 363 82.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.8e-162 574.3 349 83.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 8.8e-162 573.9 381 78.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-161 573.5 355 82.5
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 9.8e-161 570.5 371 77.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.2e-160 569.3 340 86.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.7e-160 568.5 365 80.5
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 8.3e-160 567.4 358 81.8
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.1e-159 567.0 466 67.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.4e-159 566.6 390 77.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.4e-159 566.6 375 76.8
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.4e-159 565.8 356 80.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.1e-159 565.1 353 82.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.1e-159 565.1 354 82.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 4.1e-159 565.1 356 79.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 7.0e-159 564.3 372 77.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 9.2e-159 563.9 356 79.2
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 9.2e-159 563.9 354 82.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.2e-158 563.5 349 81.4
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.7e-158 562.4 340 85.9
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.5e-158 562.0 353 81.6
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 4.5e-158 561.6 380 76.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.5e-158 561.6 353 81.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.5e-158 561.6 356 79.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 7.7e-158 560.8 370 78.6
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.3e-157 560.1 347 84.1
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.7e-157 559.7 354 82.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.7e-157 559.7 353 81.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.3e-157 559.3 360 80.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.3e-157 559.3 379 77.6
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.8e-157 558.5 353 79.9
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 5.0e-157 558.1 356 78.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 8.6e-157 557.4 385 75.6
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 8.6e-157 557.4 355 80.8
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.1e-156 557.0 368 77.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-156 557.0 353 80.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-156 557.0 348 80.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.9e-156 556.2 376 75.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.5e-156 555.8 326 85.9
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.5e-156 555.8 342 83.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.3e-156 555.4 326 86.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.3e-156 555.4 354 81.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.3e-156 555.1 360 80.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.6e-156 554.7 350 80.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 9.5e-156 553.9 352 81.5
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 9.5e-156 553.9 350 80.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.6e-155 553.1 326 86.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.1e-155 552.7 330 85.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.1e-155 552.7 323 86.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.1e-155 552.7 392 73.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.6e-155 552.0 355 80.0
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.1e-155 551.2 355 80.3
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.0e-155 550.8 350 79.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.8e-154 549.7 374 77.3
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.0e-154 548.9 326 85.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.0e-154 548.5 368 78.8
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.0e-154 548.5 327 85.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.2e-154 548.1 361 77.3
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.2e-154 548.1 359 80.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.9e-154 547.4 342 81.9
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.2e-153 547.0 364 78.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.4e-153 545.4 358 79.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 5.7e-153 544.7 329 83.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.2e-152 542.7 378 74.6
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 357 78.4
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.7e-152 542.0 322 85.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.4e-152 541.2 357 76.8
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.1e-151 540.4 358 77.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-151 540.0 375 75.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.4e-151 540.0 366 75.7
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.8e-151 539.7 358 77.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.4e-151 539.3 378 74.3
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.4e-151 539.3 332 82.5
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-151 538.9 378 74.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.2e-151 538.9 378 74.1
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 3.2e-151 538.9 358 77.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-151 538.9 383 73.1
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.1e-151 538.5 364 75.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.0e-151 537.7 366 77.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 7.0e-151 537.7 359 75.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 7.0e-151 537.7 325 84.3
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-150 537.0 353 79.6
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.6e-150 536.6 358 76.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.0e-150 536.2 365 74.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.6e-150 535.0 358 77.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 7.8e-150 534.3 355 77.5
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-149 533.1 355 77.5
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.7e-149 533.1 370 73.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-149 533.1 359 74.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.3e-149 532.7 353 78.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.3e-149 532.7 353 78.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 3.0e-149 532.3 457 65.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.6e-149 531.2 330 82.7
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 8.6e-149 530.8 373 74.8
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-148 529.6 352 77.6
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.9e-148 529.6 352 77.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-148 529.3 355 77.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.5e-148 529.3 355 77.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-147 526.9 373 74.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-147 526.9 350 78.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.4e-146 523.5 378 73.0
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.1e-146 522.3 373 73.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 4.0e-146 521.9 317 83.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 5.2e-146 521.5 418 68.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-146 521.2 326 79.4
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-144 516.5 353 77.3
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-144 516.5 353 77.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.7e-144 516.5 355 75.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.7e-142 509.2 287 88.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.7e-142 509.2 300 84.7
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 3.5e-142 508.8 346 77.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.5e-140 502.7 353 73.9
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-139 500.4 287 87.5
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.6e-139 498.8 353 72.8
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-138 496.1 378 69.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.6e-133 478.0 314 76.4
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.3e-132 475.7 313 75.4
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.1e-131 473.0 334 71.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.8e-131 472.6 313 75.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.6e-131 472.2 332 72.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.6e-131 472.2 301 78.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 4.7e-131 471.9 373 68.6
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 8.1e-131 471.1 299 79.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 6.4e-128 461.5 368 64.9
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.5e-116 422.9 330 67.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-113 414.1 265 81.5
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 6.6e-109 398.3 336 66.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.7e-109 397.9 318 64.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 5.8e-105 385.2 281 74.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.8e-98 363.6 290 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.1e-93 345.5 231 77.1
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.6e-83 313.9 378 51.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 6.9e-82 308.5 271 64.6
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 5.9e-81 305.4 209 76.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.7e-72 277.3 188 77.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.2e-70 271.2 309 50.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.0e-48 198.4 112 84.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.3e-45 187.2 113 83.2
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.6e-41 174.5 170 62.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.6e-41 174.5 170 62.4
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.6e-41 174.5 170 62.4
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.6e-33 146.4 284 34.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.7e-32 144.4 104 66.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.9e-32 143.3 102 68.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.9e-32 143.3 102 68.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.5e-31 140.6 102 67.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 5.6e-31 139.4 98 68.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 6.2e-30 136.0 106 63.2
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.3e-29 134.0 107 61.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 9.8e-28 128.6 106 59.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.9e-18 97.8 64 71.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.6e-17 93.2 65 78.5
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.0e-17 92.8 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 8.6e-16 89.0 59 74.6
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-07 62.0 38 68.4
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 7.3e-07 59.3 40 65.0


User provided reference genes

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