Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.9e-217 758.8 368 100.0
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 6.6e-186 654.1 380 83.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.1e-177 626.7 368 81.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.9e-173 612.1 374 79.1
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.5e-166 589.7 367 75.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 8.3e-165 583.9 369 75.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 9.2e-164 580.5 359 76.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.9e-162 575.1 366 74.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.9e-162 575.1 493 61.1
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 9.5e-161 570.5 366 74.9
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 2.6e-158 562.4 358 72.6
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 7.6e-158 560.8 365 71.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.9e-157 558.9 368 74.2
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.6e-155 553.1 361 73.1
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 7.8e-155 550.8 367 71.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 3.9e-154 548.5 358 71.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 8.1e-152 540.8 358 73.2
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.8e-151 539.7 360 72.2
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.1e-151 538.9 414 63.0
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 5.2e-151 538.1 364 70.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 6.9e-151 537.7 367 73.6
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.6e-150 535.8 359 71.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 3.4e-150 535.4 358 71.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 4.9e-149 531.6 360 72.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.4e-148 530.0 360 69.7
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.4e-148 529.3 359 71.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.2e-148 528.9 359 71.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 5.4e-148 528.1 357 71.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.1e-147 526.2 357 71.1
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.5e-147 525.4 358 68.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 4.6e-147 525.0 438 61.4
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 6.0e-147 524.6 356 70.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.0e-146 523.9 327 75.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.7e-146 523.1 360 71.1
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.0e-146 522.3 364 69.8
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 8.7e-146 520.8 357 69.5
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 8.7e-146 520.8 357 70.9
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.5e-145 519.2 343 71.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 7.3e-145 517.7 332 76.5
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 9.6e-145 517.3 361 68.1
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.3e-144 516.9 358 69.6
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.1e-144 516.2 358 68.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.1e-143 512.3 360 67.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-142 510.4 361 67.6
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-142 510.4 361 67.6
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.4e-142 508.8 360 66.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.7e-141 506.5 360 67.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.2e-141 506.1 360 68.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.9e-141 505.8 360 66.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.9e-141 505.0 360 66.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 7.1e-140 501.1 358 66.8
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 9.3e-140 500.7 360 67.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-139 500.0 359 68.0
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.6e-139 500.0 361 66.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.7e-139 499.2 358 67.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 4.6e-139 498.4 360 66.9
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.0e-138 497.3 359 67.4
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.3e-138 496.1 358 67.0
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.3e-138 496.1 363 65.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.3e-138 496.1 354 67.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 3.9e-138 495.4 432 56.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 4.3e-137 491.9 366 65.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 4.3e-137 491.9 364 65.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.6e-137 491.5 354 66.9
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 3.1e-135 485.7 364 65.4
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 6.9e-135 484.6 359 66.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.2e-134 483.8 364 67.0
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 4.9e-133 478.4 370 64.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.4e-132 476.1 359 64.6
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.5e-132 474.9 359 63.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 5.5e-132 474.9 358 64.0
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.7e-131 472.6 359 63.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 2.7e-131 472.6 359 63.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.5e-131 472.2 365 65.2
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 7.9e-131 471.1 364 62.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.3e-130 469.5 360 63.6
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.7e-130 468.0 359 63.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 8.7e-130 467.6 310 72.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-129 467.2 365 61.9
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.5e-129 466.8 355 65.4
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 3.3e-129 465.7 359 63.0
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 3.3e-129 465.7 359 63.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 4.3e-129 465.3 360 62.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.6e-128 463.4 365 61.9
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.6e-128 463.4 365 61.9
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 6.2e-128 461.5 359 61.8
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.3e-127 458.4 356 62.6
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 6.9e-127 458.0 365 61.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.5e-126 456.8 359 64.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 8.4e-125 451.1 365 61.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.5e-124 449.5 366 61.2
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 3.2e-124 449.1 366 61.5
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.8e-122 443.4 358 60.6
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 9.0e-119 431.0 353 62.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.0e-118 429.9 410 54.9
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 6.5e-117 424.9 268 71.6
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.7e-115 419.5 348 57.5
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.1e-114 415.2 252 78.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 9.7e-113 411.0 354 61.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.1e-111 407.5 367 55.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.4e-111 407.1 369 56.4
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.7e-110 401.4 238 78.2
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.0e-105 386.7 360 56.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.4e-105 384.8 356 51.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 4.8e-104 382.1 385 51.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.1e-103 379.4 332 57.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.5e-100 369.8 295 63.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 5.0e-93 345.5 360 52.2
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.5e-92 344.0 285 61.1
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.1e-91 338.6 212 74.5
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.8e-90 337.0 206 75.7
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.3e-90 336.7 422 43.4
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.6e-81 306.6 374 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.1e-79 301.2 411 41.1
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.0e-77 294.7 154 85.1
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.0e-77 294.7 235 63.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.8e-71 273.9 364 39.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.1e-63 248.1 132 86.4
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.4e-63 247.7 131 84.0
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.7e-56 223.0 274 45.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.7e-56 223.0 274 45.3
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 3.3e-52 209.9 208 52.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 5.6e-52 209.1 208 52.9
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 8.3e-48 195.3 186 59.7
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-41 174.5 212 49.1
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 6.0e-38 162.5 126 54.0
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 7.8e-38 162.2 83 86.7
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.7e-32 144.4 121 62.0
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-29 134.8 75 85.3
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-27 128.3 102 65.7
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-27 128.3 147 53.1
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.2e-25 121.7 122 54.1
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 2.1e-19 100.9 198 32.8


User provided reference genes

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