Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16573 Davidia involucrata HOM05D000227 ORTHO05D004725 9.0e-45 184.1 172 100.0
PGR102G1883 Punica granatum HOM05D000227 ORTHO05D004725 2.4e-37 159.5 169 70.4
Duzib187G0456 Durio zibethinus HOM05D000227 ORTHO05D004725 3.1e-37 159.1 120 79.2
Duzib147G0217 Durio zibethinus HOM05D000227 ORTHO05D004725 5.3e-37 158.3 169 76.3
Thecc.01G055300 Theobroma cacao HOM05D000227 ORTHO05D004725 6.9e-37 157.9 169 74.6
Ciclev10026635m.g Citrus clementina HOM05D000227 ORTHO05D004725 3.4e-36 155.6 169 59.2
Gorai.011G105500 Gossypium raimondii HOM05D000227 ORTHO05D004725 3.4e-36 155.6 169 76.9
FvH4_1g15980 Fragaria vesca HOM05D000227 ORTHO05D004725 4.5e-36 155.2 170 72.4
FAN19G1900 Fragaria x ananassa HOM05D000227 ORTHO05D004725 4.5e-36 155.2 170 71.8
FAN26G1743 Fragaria x ananassa HOM05D000227 ORTHO05D004725 4.5e-36 155.2 170 72.4
QL06p041468 Quercus lobata HOM05D000227 ORTHO05D004725 4.5e-36 155.2 117 74.4
Prupe.7G133900 Prunus persica HOM05D000227 ORTHO05D004725 5.8e-36 154.8 169 52.1
Gohir.A10G092100 Gossypium hirsutum HOM05D000227 ORTHO05D004725 7.6e-36 154.5 169 76.3
Gohir.D10G096300 Gossypium hirsutum HOM05D000227 ORTHO05D004725 7.6e-36 154.5 169 76.3
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.0e-35 154.1 169 66.9
Atru.chr3.338 Acer truncatum HOM05D000227 ORTHO05D004725 1.3e-35 153.7 169 71.6
MD15G1283300 Malus domestica HOM05D000227 ORTHO05D004725 1.3e-35 153.7 169 72.2
CiPaw.02G008600 Carya illinoinensis HOM05D000227 ORTHO05D004725 1.7e-35 153.3 120 72.5
RcHm_v2.0_Chr2g0105581 Rosa chinensis HOM05D000227 ORTHO05D004725 1.7e-35 153.3 169 60.4
TAR628G0033 Trochodendron aralioides HOM05D000227 ORTHO05D004725 3.8e-35 152.1 169 72.2
Aqoxy5G01235 Aquilegia oxysepala HOM05D000227 ORTHO05D004725 4.9e-35 151.8 169 58.6
DCAR_025730 Daucus carota HOM05D000227 ORTHO05D004725 4.9e-35 151.8 169 74.6
MD02G1171500 Malus domestica HOM05D000227 ORTHO05D004725 4.9e-35 151.8 169 68.6
CSS0005844 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 6.5e-35 151.4 168 76.2
CSS0046781 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 8.4e-35 151.0 169 69.2
Oeu063697.1 Olea europaea HOM05D000227 ORTHO05D004725 8.4e-35 151.0 168 67.3
Hma1.2p1_0461F.1_g157830 Hydrangea macrophylla HOM05D000227 ORTHO05D004725 1.4e-34 150.2 166 72.3
Cpa.g.sc55.154 Carica papaya HOM05D000227 ORTHO05D004725 3.2e-34 149.1 169 66.9
Potri.005G138000 Populus trichocarpa HOM05D000227 ORTHO05D004725 3.2e-34 149.1 169 71.0
CANSAT01G0976 Cannabis sativa HOM05D000227 ORTHO05D004725 4.2e-34 148.7 169 69.2
SalBow8G3918 Salvia bowleyana HOM05D000227 ORTHO05D004725 5.5e-34 148.3 169 74.6
TWI09G1594 Tripterygium wilfordii HOM05D000227 ORTHO05D004725 7.1e-34 147.9 164 75.0
Manes.13G124900 Manihot esculenta HOM05D000227 ORTHO05D004725 9.3e-34 147.5 120 65.8
CSS0018662 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 1.2e-33 147.1 121 71.9
EL10Ac4g09665 Beta vulgaris HOM05D000227 ORTHO05D004725 1.6e-33 146.7 161 55.9
CSS0041531 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 1.6e-33 146.7 166 76.5
Nn5g30315 Nelumbo nucifera HOM05D000227 ORTHO05D004725 2.1e-33 146.4 120 71.7
Rhsim09G0169200 Rhododendron simsii HOM05D000227 ORTHO05D004725 2.7e-33 146.0 118 75.4
HanXRQChr01g0009261 Helianthus annuus HOM05D000227 ORTHO05D004725 3.5e-33 145.6 167 74.3
Manes.12G101100 Manihot esculenta HOM05D000227 ORTHO05D004725 3.5e-33 145.6 119 66.4
PSO541G6342 Papaver somniferum HOM05D000227 ORTHO05D004725 3.5e-33 145.6 121 66.9
PSO675G3845 Papaver somniferum HOM05D000227 ORTHO05D004725 3.5e-33 145.6 121 66.9
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 3.5e-33 145.6 120 64.2
Cc00_g00950 Coffea canephora HOM05D000227 ORTHO05D004725 6.0e-33 144.8 169 69.2
Sabra05G0112700 Salix brachista HOM05D000227 ORTHO05D004725 1.3e-32 143.7 120 73.3
Solyc04g026350.3 Solanum lycopersicum HOM05D000227 ORTHO05D004725 2.3e-32 142.9 119 63.9
Sopen04g015290 Solanum pennellii HOM05D000227 ORTHO05D004725 2.3e-32 142.9 119 63.9
HanXRQChr13g0392961 Helianthus annuus HOM05D000227 ORTHO05D004725 5.1e-32 141.7 167 74.3
AUR62000553 Chenopodium quinoa HOM05D000227 ORTHO05D004725 1.1e-31 140.6 112 66.1
ECA248G2825 Erigeron canadensis HOM05D000227 ORTHO05D004725 1.5e-31 140.2 166 74.1
vmacro17950 Vaccinium macrocarpon HOM05D000227 ORTHO05D004725 1.5e-31 140.2 204 58.3
DCAR_010897 Daucus carota HOM05D000227 ORTHO05D004725 1.9e-31 139.8 165 56.4
unitig_899.g14976 Utricularia gibba HOM05D000227 ORTHO05D004725 1.9e-31 139.8 166 71.1
Gohir.D03G022050 Gossypium hirsutum HOM05D000227 ORTHO05D004725 2.5e-31 139.4 169 68.6
Gorai.003G023300 Gossypium raimondii HOM05D000227 ORTHO05D004725 2.5e-31 139.4 169 68.6
Aa31LG4G18590 Aethionema arabicum HOM05D000227 ORTHO05D004725 3.3e-31 139.0 169 68.0
CAN.G7.22 Capsicum annuum HOM05D000227 ORTHO05D004725 3.3e-31 139.0 119 62.2
MSTRG.23234 Avicennia marina HOM05D000227 ORTHO05D004725 4.3e-31 138.7 117 71.8
Sed0022474 Sechium edule HOM05D000227 ORTHO05D004725 5.7e-31 138.3 169 55.6
ClCG02G012810 Citrullus lanatus HOM05D000227 ORTHO05D004725 7.4e-31 137.9 169 55.6
Lj4A148G20 Lonicera japonica HOM05D000227 ORTHO05D004725 7.4e-31 137.9 109 74.3
Hund07211 Selenicereus undatus HOM05D000227 ORTHO05D004725 7.4e-31 137.9 113 73.5
Thhalv10008929m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 9.7e-31 137.5 120 68.3
Phvul.006G204800 Phaseolus vulgaris HOM05D000227 ORTHO05D004725 9.7e-31 137.5 122 72.1
THA.LOC104821257 Tarenaya hassleriana HOM05D000227 ORTHO05D004725 1.3e-30 137.1 169 70.4
Oeu032226.1 Olea europaea HOM05D000227 ORTHO05D004725 1.6e-30 136.7 169 73.4
GSVIVG01022137001 Vitis vinifera HOM05D000227 ORTHO05D004725 1.6e-30 136.7 171 63.7
BcaB05g23213 Brassica carinata HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 65.0
BcaC09g50023 Brassica carinata HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 62.5
A01p24180 Brassica napus HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 65.0
C01p29890 Brassica napus HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 62.5
BolC1t02931H Brassica oleracea HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 62.5
BraA01t02330Z Brassica rapa HOM05D000227 ORTHO05D004725 2.8e-30 136.0 120 65.0
Haze_15406 Corylus avellana HOM05D000227 ORTHO05D004725 2.8e-30 136.0 112 71.4
Lj2g0006728 Lotus japonicus HOM05D000227 ORTHO05D004725 2.8e-30 136.0 123 69.9
Carub.0005s1667 Capsella rubella HOM05D000227 ORTHO05D004725 6.3e-30 134.8 120 65.0
CARHR159830 Cardamine hirsuta HOM05D000227 ORTHO05D004725 8.2e-30 134.4 120 62.5
Glyma.15G055100 Glycine max HOM05D000227 ORTHO05D004725 8.2e-30 134.4 122 71.3
Sp5g11820 Schrenkiella parvula HOM05D000227 ORTHO05D004725 1.4e-29 133.7 120 66.7
SGA_v2.0_scaffold12G06271 Striga asiatica HOM05D000227 ORTHO05D004725 1.4e-29 133.7 121 67.8
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 1.8e-29 133.3 168 70.2
arahy.Tifrunner.gnm1.ann1.6JR7QB Arachis hypogaea HOM05D000227 ORTHO05D004725 2.4e-29 132.9 118 73.7
Psat1g058800 Pisum sativum HOM05D000227 ORTHO05D004725 5.3e-29 131.7 122 68.0
Sc09g0002180 Simmondsia chinensis HOM05D000227 ORTHO05D004725 6.9e-29 131.3 120 70.0
Lalb_Chr09g0323161 Lupinus albus HOM05D000227 ORTHO05D004725 1.2e-28 130.6 121 59.5
Medtr7g074020 Medicago truncatula HOM05D000227 ORTHO05D004725 1.2e-28 130.6 122 67.2
Peaxi162Scf00577g00213 Petunia axillaris HOM05D000227 ORTHO05D004725 2.6e-28 129.4 119 58.8
MELO3C020899.2 Cucumis melo HOM05D000227 ORTHO05D004725 3.4e-28 129.0 120 70.8
Dinv28254 Davidia involucrata HOM05D000227 ORTHO05D004725 3.4e-28 129.0 67 95.5
Os07g0618800 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004725 3.4e-28 129.0 166 47.0
Psat3g117320 Pisum sativum HOM05D000227 ORTHO05D004725 3.4e-28 129.0 122 68.0
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 4.5e-28 128.6 122 67.2
AT3G50360 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 5.9e-28 128.3 120 59.2
Medtr6g007613 Medicago truncatula HOM05D000227 ORTHO05D004725 1.0e-27 127.5 122 66.4
Ca_24773_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004725 1.7e-27 126.7 122 68.0
AL5G30490 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 2.2e-27 126.3 116 61.2
Duzib264G1107 Durio zibethinus HOM05D000227 ORTHO05D004725 2.2e-27 126.3 169 63.9
ECA248G3620 Erigeron canadensis HOM05D000227 ORTHO05D004725 2.9e-27 125.9 164 44.5
GSVIVG01038234001 Vitis vinifera HOM05D000227 ORTHO05D004725 1.4e-26 123.6 167 44.9
Solyc02g090810.4 Solanum lycopersicum HOM05D000227 ORTHO05D004725 1.9e-26 123.2 120 65.0
PGSC0003DMG402004023 Solanum tuberosum HOM05D000227 ORTHO05D004725 4.2e-26 122.1 120 65.0
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 5.5e-26 121.7 116 71.6
Sopen02g035440 Solanum pennellii HOM05D000227 ORTHO05D004725 7.2e-26 121.3 113 67.3
Peaxi162Scf00450g00419 Petunia axillaris HOM05D000227 ORTHO05D004725 1.2e-25 120.6 120 64.2
CDE04G0771 Ceratophyllum demersum HOM05D000227 ORTHO05D004725 1.6e-25 120.2 115 66.1
CAN.G660.4 Capsicum annuum HOM05D000227 ORTHO05D004725 4.6e-25 118.6 107 66.4
Glyma.08G177600 Glycine max HOM05D000227 ORTHO05D004725 4.6e-25 118.6 122 65.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 6.1e-25 118.2 117 65.0
ATR1102G007 Amborella trichopoda HOM05D000227 ORTHO05D004725 1.3e-24 117.1 164 50.0
Eucgr.H01660 Eucalyptus grandis HOM05D000227 ORTHO05D004725 3.0e-24 115.9 69 84.1
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.0e-24 115.9 166 74.1
Hund21792 Selenicereus undatus HOM05D000227 ORTHO05D004725 3.0e-24 115.9 113 65.5
CsaV3_2G016880 Cucumis sativus L. HOM05D000227 ORTHO05D004725 3.9e-24 115.5 120 65.8
Nitab4.5_0009710g0010 Nicotiana tabacum HOM05D000227 ORTHO05D004725 8.7e-24 114.4 71 78.9
TPR.G24339 Trifolium pratense HOM05D000227 ORTHO05D004725 1.9e-23 113.2 124 61.3
Nitab4.5_0009939g0030 Nicotiana tabacum HOM05D000227 ORTHO05D004725 4.3e-23 112.1 101 77.2
Oeu046362.1 Olea europaea HOM05D000227 ORTHO05D004725 7.4e-23 111.3 167 46.1
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.2e-22 109.8 158 54.4
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.2e-22 109.8 158 54.4
Carub.0007s0321 Capsella rubella HOM05D000227 ORTHO05D004725 3.7e-22 109.0 156 40.4
Sp7g34750 Schrenkiella parvula HOM05D000227 ORTHO05D004725 6.3e-22 108.2 156 40.4
THA.LOC104819845 Tarenaya hassleriana HOM05D000227 ORTHO05D004725 6.3e-22 108.2 108 50.9
BcaNung02517 Brassica carinata HOM05D000227 ORTHO05D004725 8.2e-22 107.8 165 50.9
AT4G37010 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 1.8e-21 106.7 109 50.5
Thhalv10026403m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 1.8e-21 106.7 109 50.5
AL7G13780 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 5.3e-21 105.1 109 49.5
Nitab4.5_0002016g0050 Nicotiana tabacum HOM05D000227 ORTHO05D004725 6.9e-21 104.8 100 84.0
CARHR246070 Cardamine hirsuta HOM05D000227 ORTHO05D004725 5.9e-20 101.7 109 47.7
Glyma.18G101100 Glycine max HOM05D000227 ORTHO05D004725 5.9e-20 101.7 73 72.6
Os10g0389000 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004725 5.9e-20 101.7 117 56.4
Gohir.D11G198550 Gossypium hirsutum HOM05D000227 ORTHO05D004725 1.0e-19 100.9 166 66.9
HanXRQChr04g0096001 Helianthus annuus HOM05D000227 ORTHO05D004725 1.0e-19 100.9 117 46.2
Zm00001eb223800 Zea mays HOM05D000227 ORTHO05D004725 2.9e-19 99.4 112 52.7
HanXRQChr01g0009251 Helianthus annuus HOM05D000227 ORTHO05D004725 1.9e-18 96.7 166 42.2
SGA_v2.0_scaffold51G18849 Striga asiatica HOM05D000227 ORTHO05D004725 2.5e-18 96.3 115 54.8
Glyma.18G100800 Glycine max HOM05D000227 ORTHO05D004725 7.2e-18 94.7 73 68.5
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 6.1e-17 91.7 123 43.1
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.8e-16 90.1 164 42.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 3.0e-16 89.4 158 41.8
SMO146G0058 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 5.1e-16 88.6 110 53.6
MCO09G221 Micromonas commoda HOM05D000227 ORTHO05D004725 6.7e-16 88.2 112 54.5
PRCOL_00002935 Prasinoderma coloniale HOM05D000227 ORTHO05D004725 6.7e-16 88.2 112 54.5
CBR_g38498 Chara braunii HOM05D000227 ORTHO05D004725 2.0e-15 86.7 110 55.5
Pp3c12_14390 Physcomitrium patens HOM05D000227 ORTHO05D004725 1.3e-14 84.0 112 40.2
Lsat_1_v5_gn_5_159601 Lactuca sativa HOM05D001318 ORTHO05D001152 1.7e-14 83.6 129 62.0
Pp3c4_1800 Physcomitrium patens HOM05D000227 ORTHO05D004725 8.2e-14 81.3 53 71.7
Zm00001eb327620 Zea mays HOM05D000227 ORTHO05D004725 3.1e-13 79.3 129 40.3
Mapoly0103s0016 Marchantia polymorpha HOM05D000227 ORTHO05D004725 2.0e-12 76.6 53 67.9
Pp3c3_34260 Physcomitrium patens HOM05D000227 ORTHO05D004725 4.5e-12 75.5 54 70.4
Cre11.g468450 Chlamydomonas reinhardtii HOM05D000227 ORTHO05D004725 2.2e-11 73.2 51 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1413 Anthoceros agrestis HOM05D000227 ORTHO05D004725 8.5e-11 71.2 53 67.9
Rhsim12G0022300 Rhododendron simsii HOM05D015929 ORTHO05D004725 1.4e-10 70.5 40 80.0
arahy.Tifrunner.gnm1.ann1.5P73VR Arachis hypogaea HOM05D000227 ORTHO05D004725 7.2e-10 68.2 83 47.0
SMO171G0115 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 1.2e-09 67.4 102 43.1
AagrBONN_evm.TU.Sc2ySwM_117.4048 Anthoceros agrestis HOM05D000227 ORTHO05D004725 6.1e-09 65.1 40 72.5
PRCOL_00006616 Prasinoderma coloniale HOM05D000227 ORTHO05D004725 6.1e-09 65.1 111 45.0
Zm00001eb150260 Zea mays HOM05D000227 ORTHO05D000451 6.1e-09 65.1 101 36.6
RcHm_v2.0_Chr1g0364931 Rosa chinensis HOM05D000227 ORTHO05D000451 2.3e-08 63.2 101 34.7
CBR_g54309 Chara braunii HOM05D031536 ORTHO05D026699 3.0e-08 62.8 103 33.0
AUR62006905 Chenopodium quinoa HOM05D000227 ORTHO05D004725 3.0e-08 62.8 69 52.2
FvH4_7g20700 Fragaria vesca HOM05D000227 ORTHO05D000451 3.9e-08 62.4 101 34.7
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 3.9e-08 62.4 101 34.7
Zm00001eb093450 Zea mays HOM05D000227 ORTHO05D000451 3.9e-08 62.4 100 36.0
FAN01G2463 Fragaria x ananassa HOM05D000227 ORTHO05D000451 1.5e-07 60.5 101 33.7
FAN01G2988 Fragaria x ananassa HOM05D000227 ORTHO05D000451 1.5e-07 60.5 101 33.7
A09p49600 Brassica napus HOM05D000227 ORTHO05D000451 2.0e-07 60.1 101 34.7
HPP92_001701 Vanilla planifolia HOM05D000227 ORTHO05D000451 2.0e-07 60.1 101 34.7
SMO169G0076 Selaginella moellendorffii HOM05D000227 ORTHO05D000451 2.6e-07 59.7 101 32.7
Gorai.008G292900 Gossypium raimondii HOM05D000227 ORTHO05D000451 3.3e-07 59.3 101 34.7
HanXRQChr05g0134471 Helianthus annuus HOM05D000227 ORTHO05D000451 3.3e-07 59.3 101 34.7
arahy.Tifrunner.gnm1.ann1.SNW2XV Arachis hypogaea HOM05D000227 ORTHO05D004725 7.4e-07 58.2 45 66.7
Nitab4.5_0002724g0060 Nicotiana tabacum HOM05D000227 ORTHO05D000451 7.4e-07 58.2 101 33.7
Pp3c3_1890 Physcomitrium patens HOM05D022633 ORTHO05D004725 7.4e-07 58.2 60 43.3
arahy.Tifrunner.gnm1.ann1.08U2Q7 Arachis hypogaea HOM05D000227 ORTHO05D004725 9.7e-07 57.8 67 53.7
BcaB01g00622 Brassica carinata HOM05D000227 ORTHO05D092615 9.7e-07 57.8 50 62.0
Cpa.g.sc33.178 Carica papaya HOM05D000227 ORTHO05D000451 9.7e-07 57.8 101 33.7
CiPaw.14G088900 Carya illinoinensis HOM05D000227 ORTHO05D000451 1.3e-06 57.4 101 33.7
Zm00001eb196020 Zea mays HOM05D000227 ORTHO05D000451 1.3e-06 57.4 100 35.0
SMO329G0055 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 2.2e-06 56.6 101 30.7
Aqoxy2G03043 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 2.8e-06 56.2 100 32.0
Cre03.g178350 Chlamydomonas reinhardtii HOM05D000227 ORTHO05D000451 4.8e-06 55.5 100 33.0
Pp3c13_5410 Physcomitrium patens HOM05D022633 ORTHO05D004725 4.8e-06 55.5 64 45.3
Os11g0134400 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 6.3e-06 55.1 98 30.6
SMO147G0237 Selaginella moellendorffii HOM05D000227 ORTHO05D000451 6.3e-06 55.1 99 30.3


User provided reference genes

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