Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14853 Davidia involucrata HOM05D003738 ORTHO05D005143 1.5e-109 399.4 194 100.0
Dinv34816 Davidia involucrata HOM05D003738 ORTHO05D005143 4.4e-40 168.7 192 56.2
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 1.2e-29 134.0 222 45.0
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 3.8e-23 112.5 221 42.1
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 6.4e-23 111.7 221 41.6
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 1.9e-22 110.2 206 42.2
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 3.2e-22 109.4 228 40.4
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 5.4e-22 108.6 221 41.2
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 9.2e-22 107.8 204 42.2
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 2.7e-21 106.3 204 42.2
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 3.9e-20 102.4 203 40.4
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 5.1e-20 102.1 225 39.6
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.5e-19 100.5 223 39.0
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.9e-19 100.1 223 38.1
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.9e-19 100.1 214 39.7
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 3.3e-19 99.4 204 41.2
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.3e-19 99.0 224 37.9
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 5.6e-19 98.6 206 38.8
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 7.3e-19 98.2 223 35.9
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 7.3e-19 98.2 223 35.9
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 9.6e-19 97.8 220 36.4
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 9.6e-19 97.8 206 40.3
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 1.2e-18 97.4 222 37.8
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 1.6e-18 97.1 223 35.9
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 2.1e-18 96.7 207 40.6
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 2.8e-18 96.3 204 39.2
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 2.8e-18 96.3 206 38.8
TAR374G0852 Trochodendron aralioides HOM05D003738 ORTHO05D005143 4.7e-18 95.5 209 41.1
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 8.1e-18 94.7 222 36.5
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 8.1e-18 94.7 224 38.4
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 8.1e-18 94.7 217 40.1
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 8.1e-18 94.7 218 38.1
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 1.4e-17 94.0 206 39.3
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 2.4e-17 93.2 211 39.3
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 4.0e-17 92.4 213 37.6
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 4.0e-17 92.4 206 38.8
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 5.2e-17 92.0 205 39.0
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 5.2e-17 92.0 207 39.1
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 6.9e-17 91.7 213 37.6
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 6.9e-17 91.7 223 39.0
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 6.9e-17 91.7 214 38.3
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 6.9e-17 91.7 215 35.8
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 8.9e-17 91.3 217 37.8
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 8.9e-17 91.3 213 38.0
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.2e-16 90.9 203 39.4
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 1.2e-16 90.9 203 36.9
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 1.5e-16 90.5 203 37.4
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 2.6e-16 89.7 223 35.9
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 2.6e-16 89.7 212 37.7
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 2.6e-16 89.7 217 37.3
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 3.4e-16 89.4 207 37.2
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 3.4e-16 89.4 206 36.9
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 3.4e-16 89.4 205 38.5
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 4.4e-16 89.0 209 38.8
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 4.4e-16 89.0 226 38.1
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 5.8e-16 88.6 203 38.9
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 7.6e-16 88.2 206 37.9
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 1.3e-15 87.4 201 37.8
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 1.7e-15 87.0 205 38.5
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 1.7e-15 87.0 203 37.4
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 1.7e-15 87.0 207 36.2
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 2.2e-15 86.7 212 38.2
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 2.2e-15 86.7 203 37.4
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 2.2e-15 86.7 225 36.0
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 3.8e-15 85.9 224 36.2
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 4.9e-15 85.5 227 37.9
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 4.9e-15 85.5 205 38.0
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 4.9e-15 85.5 227 36.1
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 6.4e-15 85.1 207 37.2
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 8.4e-15 84.7 206 37.4
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.4e-14 84.0 205 37.6
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 1.4e-14 84.0 221 35.7
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 1.9e-14 83.6 204 38.7
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 2.4e-14 83.2 212 37.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 2.4e-14 83.2 220 33.6
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 3.2e-14 82.8 224 35.7
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 3.2e-14 82.8 224 33.0
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 3.2e-14 82.8 223 36.3
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 5.4e-14 82.0 220 34.1
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 7.1e-14 81.6 212 36.3
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 7.1e-14 81.6 210 35.7
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 7.1e-14 81.6 225 35.1
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.2e-13 80.9 215 33.0
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 1.2e-13 80.9 205 36.6
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 2.7e-13 79.7 214 35.5
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 6.0e-13 78.6 227 35.2
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 6.0e-13 78.6 225 35.1
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.3e-12 77.4 205 35.6
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 1.7e-12 77.0 205 36.1
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 1.7e-12 77.0 207 34.3
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 3.0e-12 76.3 207 33.8
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 3.0e-12 76.3 225 34.7
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 3.0e-12 76.3 218 34.4
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 3.9e-12 75.9 204 33.8
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 5.1e-12 75.5 207 33.8
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 5.1e-12 75.5 207 35.7
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 8.7e-12 74.7 205 34.6
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 8.7e-12 74.7 208 34.6
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 1.9e-11 73.6 207 35.7
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 1.9e-11 73.6 207 35.7
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 7.3e-11 71.6 205 36.1
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 1.6e-10 70.5 208 33.2
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 2.8e-10 69.7 225 31.1
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 2.8e-10 69.7 208 37.0
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 3.6e-10 69.3 209 33.0
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.4e-09 67.4 210 31.9
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 1.4e-09 67.4 206 32.5
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 9.0e-09 64.7 188 37.2
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 1.5e-08 63.9 212 31.6
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 6.4e-07 58.5 216 30.6
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 3.2e-06 56.2 211 32.7


User provided reference genes

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