Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14502 Davidia involucrata HOM05D003658 ORTHO05D004457 2.1e-76 288.9 139 100.0
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 3.1e-43 178.7 91 95.6
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 8.9e-43 177.2 91 95.6
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.5e-42 176.4 92 93.5
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 3.4e-42 175.3 91 93.4
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.4e-42 174.9 92 92.4
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.4e-42 174.9 92 92.4
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 4.4e-42 174.9 91 94.5
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 5.8e-42 174.5 91 92.3
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 5.8e-42 174.5 91 93.4
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 5.8e-42 174.5 91 94.5
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 94.5
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 94.5
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 94.5
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 93.4
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 93.4
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 93.4
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 7.5e-42 174.1 91 93.4
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 9.8e-42 173.7 91 94.5
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 9.8e-42 173.7 92 91.3
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 92.3
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 92.3
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 92.3
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 1.3e-41 173.3 91 93.4
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 1.7e-41 172.9 91 92.3
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 1.7e-41 172.9 91 92.3
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.7e-41 172.9 91 92.3
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 1.7e-41 172.9 91 93.4
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 2.2e-41 172.6 91 92.3
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.9e-41 172.2 91 93.4
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.9e-41 172.2 91 92.3
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.9e-41 172.2 91 93.4
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 2.9e-41 172.2 91 92.3
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 3.7e-41 171.8 91 91.2
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 3.7e-41 171.8 91 92.3
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.9e-41 171.4 91 92.3
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 4.9e-41 171.4 91 91.2
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 4.9e-41 171.4 91 92.3
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 4.9e-41 171.4 92 90.2
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 6.4e-41 171.0 91 92.3
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 6.4e-41 171.0 91 91.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 6.4e-41 171.0 91 91.2
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 8.3e-41 170.6 91 90.1
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 8.3e-41 170.6 91 91.2
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.1e-40 170.2 91 92.3
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 1.1e-40 170.2 91 91.2
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 1.1e-40 170.2 91 90.1
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 1.1e-40 170.2 91 89.0
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 1.1e-40 170.2 91 91.2
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 1.4e-40 169.9 91 91.2
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.4e-40 169.9 91 89.0
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.4e-40 169.9 91 89.0
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.4e-40 169.9 91 91.2
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.4e-40 169.9 91 91.2
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 1.9e-40 169.5 91 87.9
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 1.9e-40 169.5 91 87.9
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 1.9e-40 169.5 91 90.1
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 1.9e-40 169.5 91 90.1
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 2.4e-40 169.1 91 89.0
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.4e-40 169.1 91 91.2
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 2.4e-40 169.1 91 89.0
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 2.4e-40 169.1 91 90.1
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 2.4e-40 169.1 91 90.1
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 3.2e-40 168.7 91 91.2
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 3.2e-40 168.7 91 90.1
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 3.2e-40 168.7 91 87.9
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 4.1e-40 168.3 91 87.9
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 4.1e-40 168.3 91 90.1
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 4.1e-40 168.3 91 90.1
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 4.1e-40 168.3 91 89.0
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 5.4e-40 167.9 91 90.1
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 7.0e-40 167.5 91 89.0
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 9.2e-40 167.2 91 86.8
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 9.2e-40 167.2 91 86.8
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 9.2e-40 167.2 91 89.0
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 9.2e-40 167.2 91 86.8
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 9.2e-40 167.2 91 87.9
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.2e-39 166.8 91 89.0
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 1.2e-39 166.8 91 86.8
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 1.6e-39 166.4 91 89.0
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 1.6e-39 166.4 91 87.9
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 1.6e-39 166.4 91 89.0
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 2.0e-39 166.0 91 89.0
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 2.0e-39 166.0 91 87.9
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.0e-39 166.0 91 89.0
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 2.7e-39 165.6 91 87.9
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 2.7e-39 165.6 91 90.1
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 3.5e-39 165.2 91 87.9
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 3.5e-39 165.2 91 89.0
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 3.5e-39 165.2 91 87.9
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 3.5e-39 165.2 91 86.8
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.6e-39 164.9 91 89.0
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 6.0e-39 164.5 91 87.9
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 6.0e-39 164.5 91 87.9
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 7.8e-39 164.1 91 85.7
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 7.8e-39 164.1 91 85.7
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 1.0e-38 163.7 91 85.7
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 1.7e-38 162.9 91 90.1
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 1.7e-38 162.9 91 84.6
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 2.3e-38 162.5 92 87.0
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 2.3e-38 162.5 92 88.0
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 5.0e-38 161.4 91 84.6
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 5.0e-38 161.4 91 83.5
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 5.0e-38 161.4 91 83.5
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 8.6e-38 160.6 90 88.9
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 8.6e-38 160.6 92 82.6
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 1.1e-37 160.2 91 84.6
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.5e-37 159.8 91 83.5
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.9e-37 159.5 90 85.6
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 3.3e-37 158.7 91 83.5
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 3.3e-37 158.7 91 83.5
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 5.6e-37 157.9 86 90.7
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.6e-37 157.9 91 84.6
TAR633G0489 Trochodendron aralioides HOM05D003658 ORTHO05D004457 5.6e-37 157.9 89 88.8
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 5.6e-37 157.9 91 83.5
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 1.6e-36 156.4 91 83.5
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 4.7e-36 154.8 91 83.5
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 8.1e-36 154.1 91 78.0
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.8e-35 152.9 91 82.4
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 2.3e-35 152.5 91 82.4
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 5.2e-35 151.4 91 81.3
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 6.8e-35 151.0 91 81.3
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 1.3e-33 146.7 87 80.5
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 8.3e-33 144.1 91 74.7
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 5.1e-30 134.8 87 73.6
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.0e-22 109.0 81 65.4
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.1e-21 107.1 121 48.8
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 4.3e-21 105.1 58 84.5
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 2.4e-19 99.4 58 86.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 6.8e-19 97.8 90 52.2
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 2.9e-17 92.4 54 87.0
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 9.3e-16 87.4 89 46.1
Sc12g0005830 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.0e-14 84.0 52 78.8
CAN.G185.26 Capsicum annuum HOM05D000875 ORTHO05D000684 4.8e-12 75.1 52 76.9
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.4e-11 73.6 88 43.2
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 4.0e-11 72.0 37 91.9
Nn3g17258 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.5e-10 70.1 50 72.0


User provided reference genes

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