Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 0.0e+00 1484.5 754 100.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1167.9 763 78.4
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1164.1 763 78.1
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 0.0e+00 1118.2 760 76.4
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 0.0e+00 1103.2 761 74.5
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 0.0e+00 1097.4 756 74.9
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 0.0e+00 1089.7 762 74.5
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 0.0e+00 1075.5 736 75.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.5e-311 1072.4 758 74.3
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 3.6e-311 1071.2 755 72.1
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 7.7e-311 1070.1 758 72.4
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.3e-308 1062.8 756 73.4
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.1e-308 1062.0 730 74.9
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.7e-308 1061.2 759 71.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 3.8e-305 1051.2 761 71.7
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.1e-303 1045.4 756 71.6
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 8.2e-300 1033.5 764 71.2
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 3.1e-299 1031.6 759 70.6
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.0e-297 1026.5 753 70.1
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 6.5e-297 1023.8 759 70.1
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.4e-296 1022.7 751 71.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.9e-296 1022.3 773 69.0
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 3.9e-294 1014.6 759 68.0
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.5e-293 1012.7 763 68.0
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 4.1e-291 1004.6 754 69.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.8e-289 998.0 768 68.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 8.5e-289 996.9 759 67.5
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 9.4e-288 993.4 749 69.7
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-286 989.6 749 70.0
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.8e-286 989.2 750 68.8
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.8e-286 989.2 797 65.1
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-286 988.8 765 67.5
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 3.0e-286 988.4 762 67.1
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 3.0e-286 988.4 749 70.0
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.1e-286 987.6 730 70.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 6.7e-286 987.3 749 69.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.9e-285 985.7 764 67.8
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 9.7e-285 983.4 778 65.7
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.7e-284 982.6 759 68.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 6.3e-284 980.7 759 67.2
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 4.5e-282 974.5 757 65.8
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.3e-281 973.0 755 66.0
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.3e-281 973.0 755 66.0
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 1.7e-281 972.6 760 65.8
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 5.0e-281 971.1 760 67.1
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.5e-280 968.8 764 66.2
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.7e-279 965.3 766 65.9
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 2.6e-277 958.7 812 62.2
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 3.3e-277 958.4 757 65.4
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 5.7e-277 957.6 755 65.3
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 7.4e-277 957.2 766 65.5
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 4.8e-276 954.5 765 65.5
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.1e-275 953.4 762 65.4
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 2.4e-275 952.2 764 65.1
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 5.3e-275 951.0 771 64.2
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 4.2e-272 941.4 753 63.7
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 2.1e-271 939.1 757 65.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 6.1e-271 937.6 753 65.1
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.0e-269 932.6 744 65.7
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 4.4e-269 931.4 757 64.6
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.3e-268 929.9 719 67.5
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 4.8e-268 927.9 769 64.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 1.4e-267 926.4 753 64.3
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.8e-267 926.0 1005 52.9
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.1e-267 925.2 755 64.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 4.1e-267 924.9 763 67.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.3e-267 924.5 762 63.6
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 2.9e-265 918.7 732 65.0
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 4.0e-262 908.3 748 62.8
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 8.8e-254 880.6 744 61.4
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.7e-252 876.3 738 61.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 5.4e-251 871.3 733 61.4
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.7e-250 869.0 746 60.5
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.3e-249 866.7 753 61.1
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 2.9e-249 865.5 735 61.5
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.1e-248 863.6 768 60.5
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 3.3e-248 862.1 651 68.2
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.7e-247 858.2 727 61.1
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.0e-246 857.1 782 58.6
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.4e-243 846.7 735 60.4
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 9.2e-243 844.0 745 60.1
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.2e-242 843.6 958 51.8
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.3e-241 840.1 732 59.8
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 8.6e-241 837.4 733 60.0
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.2e-239 833.6 732 59.6
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.1e-235 820.5 856 52.3
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.4e-235 819.3 747 57.8
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.4e-235 819.3 747 57.8
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.1e-231 806.2 772 57.0
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 2.8e-231 805.8 645 65.1
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.8e-230 801.2 763 54.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 3.4e-229 798.9 617 68.1
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 7.0e-227 791.2 697 59.5
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 4.0e-222 775.4 768 55.6
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.2e-221 773.9 745 56.0
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.1e-218 763.1 509 77.6
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 4.3e-200 702.2 610 63.4
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.5e-197 692.2 611 62.2
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 2.0e-181 640.2 564 60.8
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.8e-177 627.1 747 48.2
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.9e-176 623.6 719 49.0
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 5.9e-165 585.5 788 42.9
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 7.7e-165 585.1 770 44.4
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 9.7e-152 541.6 387 67.4
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 5.9e-133 479.2 405 61.0
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-118 431.0 675 40.6
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.6e-112 410.6 730 38.9
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-107 394.4 464 47.4
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.9e-107 394.4 476 47.7
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-104 385.2 484 46.1
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.8e-97 361.3 327 61.5
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.9e-91 341.3 311 59.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-88 329.7 266 66.5
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.6e-84 316.2 259 65.3
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.1e-81 307.4 1029 27.6
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 5.1e-76 290.0 185 76.2
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 8.4e-71 272.7 270 58.1
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 4.2e-70 270.4 227 67.0
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 6.9e-65 253.1 160 76.2
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.2e-63 248.1 389 40.9
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.2e-58 231.5 289 42.6
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.9e-54 218.4 159 64.8
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.3e-52 211.5 725 28.0
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.1e-49 202.6 168 57.7
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 5.3e-49 200.3 124 75.8
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 2.6e-35 154.8 171 57.3
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 7.5e-35 153.3 278 42.1
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.5e-31 139.8 183 45.9
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.3e-26 123.2 111 57.7
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 7.7e-24 116.7 101 64.4
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-21 109.0 118 49.2
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 2.1e-21 108.6 189 33.9
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 1.1e-17 96.3 64 73.4
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.1e-13 82.0 64 57.8
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 6.8e-12 77.0 163 31.3
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.2e-11 76.3 123 31.7
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 3.4e-11 74.7 54 64.8
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.7e-11 73.9 165 31.5
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.4e-09 67.4 193 29.5
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-08 66.2 51 60.8
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 1.6e-08 65.9 142 28.2
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 1.9e-06 58.9 38 63.2
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.3e-06 57.0 51 43.1
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.3e-06 57.0 51 43.1


User provided reference genes

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