Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.4e-212 742.7 370 100.0
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 6.3e-120 434.9 432 56.9
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 4.4e-89 332.4 394 51.5
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 4.4e-89 332.4 394 51.5
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 7.5e-89 331.6 382 49.7
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.8e-87 327.0 443 45.8
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 7.0e-87 325.1 388 49.5
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.2e-86 324.3 408 47.5
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 4.6e-86 322.4 398 49.0
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.8e-86 321.6 404 49.3
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.0e-85 321.2 357 51.5
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.0e-85 321.2 384 48.4
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.3e-85 320.9 409 47.7
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 8.6e-85 318.2 388 50.0
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 8.6e-85 318.2 423 47.0
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 8.6e-85 318.2 414 47.6
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.5e-84 317.4 388 50.0
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.9e-84 317.0 404 49.0
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 4.3e-84 315.8 389 47.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 2.8e-83 313.2 437 44.4
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.0e-82 311.2 422 46.2
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.4e-82 310.8 442 45.2
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.3e-82 310.1 385 48.6
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 3.1e-82 309.7 385 48.1
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 3.1e-82 309.7 394 48.2
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 3.1e-82 309.7 438 44.7
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 4.0e-82 309.3 385 48.6
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 4.0e-82 309.3 433 44.1
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 4.0e-82 309.3 353 49.6
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 5.2e-82 308.9 355 49.9
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 5.2e-82 308.9 435 43.2
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 5.2e-82 308.9 414 43.2
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 6.8e-82 308.5 385 48.3
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 8.9e-82 308.1 385 48.1
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 8.9e-82 308.1 392 44.9
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 1.2e-81 307.8 386 48.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 1.5e-81 307.4 427 45.7
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 3.4e-81 306.2 403 45.9
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 9.8e-81 304.7 375 48.5
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 1.3e-80 304.3 432 44.4
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.3e-80 304.3 353 49.9
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.3e-80 304.3 370 50.3
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.2e-80 303.5 387 47.8
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 2.9e-80 303.1 351 48.7
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 3.7e-80 302.8 370 50.0
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 6.4e-80 302.0 353 49.9
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 6.4e-80 302.0 353 49.9
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 8.3e-80 301.6 436 44.0
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.3e-80 301.6 312 52.9
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 1.1e-79 301.2 370 50.0
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.4e-79 300.8 375 46.1
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.4e-79 300.1 435 43.4
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.2e-79 299.7 435 43.7
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.2e-79 299.7 370 48.9
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.7e-78 296.6 439 46.9
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 2.7e-78 296.6 451 45.0
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 2.7e-78 296.6 445 43.1
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 7.8e-78 295.0 365 48.2
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.3e-77 294.3 370 48.1
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.7e-77 293.9 351 48.1
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.0e-77 293.1 409 45.2
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 3.0e-77 293.1 434 44.0
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.0e-77 292.4 358 49.2
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 5.0e-77 292.4 387 46.0
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.1e-76 291.2 355 48.5
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.5e-76 290.8 437 43.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.5e-76 290.8 366 45.9
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.5e-76 290.8 367 48.8
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.5e-76 290.8 434 43.1
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 1.9e-76 290.4 358 47.8
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 2.5e-76 290.0 349 49.3
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 2.5e-76 290.0 367 46.6
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 3.3e-76 289.7 360 46.1
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 4.3e-76 289.3 363 46.6
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 4.3e-76 289.3 366 47.3
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.2e-75 287.7 366 45.9
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.2e-75 287.7 435 43.7
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.2e-75 287.7 423 44.9
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 2.8e-75 286.6 411 43.6
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.8e-75 286.6 450 43.3
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 4.7e-75 285.8 390 44.6
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 4.7e-75 285.8 449 42.3
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 6.2e-75 285.4 313 51.4
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 6.2e-75 285.4 449 42.8
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 6.2e-75 285.4 385 45.5
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 8.1e-75 285.0 387 45.2
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.1e-74 284.6 368 46.7
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.4e-74 284.3 356 47.2
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.4e-74 284.3 400 45.0
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 1.8e-74 283.9 447 43.6
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.3e-74 283.5 427 42.6
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.3e-74 283.5 432 42.4
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 2.3e-74 283.5 366 47.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 2.3e-74 283.5 353 49.9
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 3.1e-74 283.1 397 44.6
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 3.1e-74 283.1 365 45.5
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 8.9e-74 281.6 387 45.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 8.9e-74 281.6 364 46.7
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.0e-73 280.4 449 41.6
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 5.8e-73 278.9 437 42.6
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 1.3e-72 277.7 378 43.7
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.7e-72 277.3 371 45.0
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 7.1e-71 271.9 520 37.1
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 6.0e-70 268.9 375 44.8
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 6.0e-70 268.9 399 42.4
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.7e-69 267.3 370 46.2
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 2.3e-69 266.9 358 43.6
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.3e-69 266.9 363 43.3
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 1.9e-68 263.8 375 44.5
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 6.2e-67 258.8 379 40.6
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 3.4e-65 253.1 360 41.4
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 3.7e-64 249.6 381 41.5
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 6.2e-59 232.3 361 39.9
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 8.9e-58 228.4 178 64.6
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.7e-56 224.2 361 39.3
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 2.4e-50 203.8 201 53.2
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.4e-49 199.5 235 48.9
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.6e-46 191.0 327 39.1
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.3e-45 188.0 297 40.4
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 6.6e-45 185.7 424 31.6
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.1e-42 178.3 308 39.0
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 3.1e-42 176.8 361 40.4
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.5e-41 174.5 420 31.4
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 9.9e-41 171.8 205 49.8
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.4e-39 167.9 154 56.5
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 6.0e-38 162.5 191 49.7
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 2.5e-36 157.1 225 46.7
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.1e-35 154.1 191 50.8
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.5e-25 121.3 174 37.4
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.0e-25 120.9 162 40.1
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.2e-23 113.2 91 62.6
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 5.5e-23 112.8 349 26.6
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.0e-21 108.6 99 57.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.3e-21 108.2 200 31.0
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.6e-17 94.0 75 57.3
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.4e-15 88.2 81 55.6
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.2e-14 85.1 73 60.3
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 2.3e-13 80.9 95 52.6
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 2.0e-12 77.8 53 67.9
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-10 70.1 41 75.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-10 70.1 41 75.6


User provided reference genes

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