Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 9.6e-178 626.7 314 100.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.5e-118 427.9 297 73.7
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.5e-118 427.9 297 73.7
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.1e-112 410.6 294 71.4
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.8e-107 393.3 299 69.2
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 7.5e-106 387.9 290 69.3
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 7.5e-106 387.9 290 69.3
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 6.3e-105 384.8 294 69.0
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.1e-104 382.5 282 68.8
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.0e-103 379.8 289 67.5
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 2.5e-101 372.9 289 66.4
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 3.3e-101 372.5 290 68.3
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 4.3e-101 372.1 297 65.0
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 7.2e-101 371.3 288 67.7
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.1e-100 369.8 289 67.1
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 3.6e-100 369.0 297 64.3
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 3.6e-100 369.0 297 63.6
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.5e-98 363.6 289 64.4
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.5e-98 363.6 289 68.2
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 4.4e-98 362.1 289 67.8
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.3e-97 360.5 257 70.8
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.2e-97 359.8 303 63.7
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.7e-97 359.0 299 65.2
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 7.0e-96 354.8 290 64.8
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 9.2e-96 354.4 225 76.9
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 9.2e-96 354.4 289 64.4
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.0e-95 353.2 290 65.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 5.9e-95 351.7 285 66.7
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 7.8e-95 351.3 302 62.3
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.0e-94 350.9 293 62.5
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.0e-94 350.9 290 63.4
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.3e-94 350.5 287 63.8
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 1.3e-94 350.5 287 65.2
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.3e-94 350.5 287 63.4
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.7e-94 350.1 274 65.3
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.7e-94 350.1 295 61.4
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 2.3e-94 349.7 243 71.6
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 5.0e-94 348.6 290 64.5
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 8.6e-94 347.8 289 61.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 8.6e-94 347.8 227 74.4
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 8.6e-94 347.8 285 63.9
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.1e-93 347.4 288 60.4
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.1e-93 347.4 287 62.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.9e-93 346.7 290 63.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 1.9e-93 346.7 290 63.8
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.5e-93 346.3 310 60.0
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 4.3e-93 345.5 295 63.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 5.6e-93 345.1 287 61.0
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 7.3e-93 344.7 287 62.0
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.6e-92 343.6 287 62.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.6e-92 343.6 288 64.9
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.1e-92 343.2 288 63.9
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.8e-92 342.8 288 62.8
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 4.7e-92 342.0 266 67.3
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 6.2e-92 341.7 287 62.0
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 6.2e-92 341.7 289 63.0
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 6.2e-92 341.7 266 66.9
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.8e-91 340.1 295 59.3
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 3.1e-91 339.3 287 62.0
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 4.0e-91 339.0 184 87.0
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.2e-90 337.4 287 62.0
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.6e-90 336.3 288 64.6
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 2.6e-90 336.3 274 65.7
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 3.4e-90 335.9 289 61.9
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 3.4e-90 335.9 289 61.9
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 4.4e-90 335.5 291 61.2
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 5.8e-90 335.1 294 60.5
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 7.5e-90 334.7 257 66.1
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 9.8e-90 334.3 311 57.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.8e-90 334.3 289 63.7
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.8e-90 334.3 288 64.2
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.7e-89 333.6 286 61.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.2e-89 333.2 287 61.7
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.9e-89 332.8 228 71.9
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.9e-89 332.8 257 65.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 6.4e-89 331.6 287 60.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 2.4e-88 329.7 232 68.5
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 9.2e-88 327.8 257 65.0
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 9.2e-88 327.8 288 60.1
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 7.8e-87 324.7 289 60.2
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 7.8e-87 324.7 289 60.2
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 7.8e-87 324.7 289 60.2
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 1.0e-86 324.3 290 60.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.3e-86 323.2 288 60.4
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 6.6e-86 321.6 301 58.8
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 8.6e-86 321.2 288 59.4
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.1e-85 320.9 227 70.0
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 5.6e-85 318.5 189 78.8
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.5e-85 317.8 298 58.4
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.6e-84 317.0 229 66.8
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 8.9e-83 311.2 288 59.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.6e-82 309.7 289 57.8
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.6e-82 309.7 308 55.5
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 5.8e-82 308.5 288 56.2
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 5.8e-82 308.5 288 56.2
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 5.8e-82 308.5 288 56.2
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 2.2e-81 306.6 257 60.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.7e-81 305.8 190 76.3
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 4.9e-81 305.4 206 69.9
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 9.2e-80 301.2 300 55.0
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 6.6e-78 295.0 284 57.4
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 2.3e-75 286.6 287 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.2e-74 284.3 230 59.6
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 7.6e-74 281.6 233 64.8
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.9e-73 278.9 319 48.9
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.4e-73 278.1 244 54.9
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.2e-72 276.2 226 57.5
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.1e-72 275.8 244 55.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 5.4e-72 275.4 230 60.0
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.2e-72 274.6 233 63.9
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.5e-71 272.7 249 53.4
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 1.3e-70 270.8 237 59.5
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.5e-69 267.3 290 51.7
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.0e-66 256.9 173 70.5
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 3.8e-65 252.7 233 54.9
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 5.3e-59 232.3 197 56.3
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 4.4e-58 229.2 205 54.6
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.9e-56 223.8 212 56.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.1e-55 220.3 268 47.4
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 3.1e-51 206.5 182 55.5
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.3e-46 191.0 115 78.3
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.3e-45 186.4 247 43.7
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.9e-41 172.6 173 51.4
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 6.5e-41 172.2 150 60.7
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 3.9e-38 162.9 99 79.8
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.5e-37 161.0 174 48.3
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 4.3e-37 159.5 100 73.0
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 6.9e-27 125.6 179 44.7
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.7e-23 113.6 132 45.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.1e-23 112.5 156 41.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-22 111.3 129 46.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.8e-22 110.9 140 45.7
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-22 109.8 130 44.6
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-18 98.2 133 40.6
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.5e-18 96.3 57 77.2
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-16 90.9 100 44.0
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.5e-16 90.5 88 48.9
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 2.1e-15 87.4 49 77.6
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.8e-14 82.0 91 41.8
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 1.5e-13 81.3 49 75.5
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-12 77.8 78 44.9
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.1e-11 75.1 52 71.2
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-11 74.7 132 33.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-11 74.7 132 33.3
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 5.9e-10 69.3 63 52.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-08 64.3 96 37.5
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 3.2e-08 63.5 74 47.3
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.2e-08 63.5 80 42.5
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.1e-07 60.8 34 76.5
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 2.3e-06 57.4 45 57.8


User provided reference genes

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